PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G201900.1.p
Common NameGLYMA_05G201900, LOC100813103
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family BBR-BPC
Protein Properties Length: 318aa    MW: 35583.3 Da    PI: 9.6892
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G201900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind332.51.2e-10113171301
            GAGA_bind   1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdaki..rernlalsekkaavaerdmaflqrdkalaer 70 
                          mdd  ++e  r+k  yy+              ++ ++l   +++++ s++aer+a+i   e ++a+sek++a+a+rd a  qrd+ala+r
  Glyma.05G201900.1.p   1 MDDGRQHEngRHKMeYYRgahslwntdsqhqvKEpNALV--MNKKIRSIMAERQAAIleIELEAAISEKNEALAARDAAIRQRDEALAQR 88 
                          677666555899988999999999999877663335666..99**************76677889************************* PP

            GAGA_bind  71 nkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpk 160
                          ++al+erdn+l+al+ ++ns   + p+g ++  g+k ++++ + + +++++ a++++++ + +a p++  ++ea +++++k+++++k+  
  Glyma.05G201900.1.p  89 DNALLERDNALAALQSRNNS--VNFPFGGGIQCGSKRMHHSSN-HLSNMTEAAYNTKDMIIRDASPVTVIPSEAVNSHQSKRSKENKVIN 175
                          ****************9998..66799999999******8887.669*******************999999998888888777776655 PP

            GAGA_bind 161 ekkak...kkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvs 247
                          +k +k   k+kk +e+ +++ ++e+  ++ ++e++ +d+++n v++De+ + vPvC+CtG++rqCYkWGnGGWqS+CCttt+S+yPLP+ 
  Glyma.05G201900.1.p 176 SKASKppcKVKKMGEDLNRQASSEG--TKIRSEWDRQDVGVNLVAFDETIMLVPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSMYPLPQL 263
                          5555544688888888877777777..67************************************************************* PP

            GAGA_bind 248 tkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          +++r+aRi+grKmS+++f++lL++L +eG+dls p+DLk++WA+HGtn+++ti+
  Glyma.05G201900.1.p 264 PNKRHARIGGRKMSGSVFTRLLSRLVSEGHDLSIPLDLKEYWARHGTNRYITIK 317
                          *****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.0E-1351317IPR010409GAGA-binding transcriptional activator
PfamPF062171.4E-951317IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDDGRQHENG RHKMEYYRGA HSLWNTDSQH QVKEPNALVM NKKIRSIMAE RQAAILEIEL  60
EAAISEKNEA LAARDAAIRQ RDEALAQRDN ALLERDNALA ALQSRNNSVN FPFGGGIQCG  120
SKRMHHSSNH LSNMTEAAYN TKDMIIRDAS PVTVIPSEAV NSHQSKRSKE NKVINSKASK  180
PPCKVKKMGE DLNRQASSEG TKIRSEWDRQ DVGVNLVAFD ETIMLVPVCT CTGVPRQCYK  240
WGNGGWQSSC CTTTLSMYPL PQLPNKRHAR IGGRKMSGSV FTRLLSRLVS EGHDLSIPLD  300
LKEYWARHGT NRYITIK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.95830.0cotyledon| root| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G201900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525427.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_003525429.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_006580620.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_028233459.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_028233460.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_028233461.10.0protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-125BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A0B2QBP80.0A0A0B2QBP8_GLYSO; Protein BASIC PENTACYSTEINE4
TrEMBLI1K6R50.0I1K6R5_SOYBN; Uncharacterized protein
STRINGGLYMA05G38430.50.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Representative plantOGRP28411331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-122basic pentacysteine 4