PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G195000.1.p | ||||||||
Common Name | GLYMA_05G195000, Glyma05g32850.1, LOC100170751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 299aa MW: 34223.7 Da PI: 6.9423 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.5 | 4.6e-52 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtd+elv++yL++k++++++ + +ike+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk Glyma.05G195000.1.p 7 LPPGFRFHPTDDELVNHYLCRKCAAQTIAV-PIIKEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADK 95 79*************************999.88***************7666789*********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + ++ g+kk Lvfy g+apkg+kt+W+mheyrl Glyma.05G195000.1.p 96 PIGK--PKALGIKKALVFYAGKAPKGVKTNWIMHEYRL 131 **98..778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-61 | 4 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.603 | 7 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-27 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MPGELQLPPG FRFHPTDDEL VNHYLCRKCA AQTIAVPIIK EIDLYKFDPW QLPEMALYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA TGADKPIGKP KALGIKKALV FYAGKAPKGV 120 KTNWIMHEYR LANVDRSASK KNTTTNNLRL DDWVLCRIYN KKGKIEKYNG VAVVDQKVAK 180 LSEEEVQFQH ETKPQIKMYG HDDFRNDQLY MDTSDSGPRL HTDSSCSEHV VSPDGTCEKE 240 VQSEPKWNDL ELGPDPALGF DFNFMDLTSD DAFAPQVQYQ INHLSPWQEM FTYLPKTF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-84 | 3 | 167 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.30424 | 0.0 | leaf| meristem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G195000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031210 | 0.0 | KT031210.1 Glycine max clone HN_CCL_6 NAC transcription factor (Glyma05g32850.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304649.1 | 0.0 | NAC domain-containing protein 2 | ||||
Refseq | XP_028233334.1 | 0.0 | NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-121 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0B2QC62 | 0.0 | A0A0B2QC62_GLYSO; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0K2CTE4 | 0.0 | A0A0K2CTE4_SOYBN; NAC transcription factor | ||||
STRING | GLYMA05G32850.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-124 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G195000.1.p |
Entrez Gene | 100170751 |