PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G191300.1.p
Common NameGLYMA_05G191300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 318aa    MW: 35026.6 Da    PI: 4.5321
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G191300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.53.8e-3451233121
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          +G+rFhPt  elvv++Lk+kv +kk+    +i+e+diyk+ Pw Lp k +++++e ewy F++ +kky +g++ + atk  yWkatgkd+
  Glyma.05G191300.1.p   5 VGVRFHPTGVELVVYFLKRKVMAKKICD-GFIAELDIYKYAPWGLPdKsCLRTGELEWYIFCPLEKKYGSGSKMKLATKIRYWKATGKDR 93 
                          7************************877.89**************96447778888********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdW 121
                           v + ++++vg+ ktL+f++g++p ge+tdW
  Glyma.05G191300.1.p  94 VVQH-NNRTVGMIKTLIFHTGKSPCGERTDW 123
                          9999.999*********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.8943151IPR003441NAC domain
SuperFamilySSF1019418.37E-394134IPR003441NAC domain
PfamPF023651.7E-135123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAKAVGVRFH PTGVELVVYF LKRKVMAKKI CDGFIAELDI YKYAPWGLPD KSCLRTGELE  60
WYIFCPLEKK YGSGSKMKLA TKIRYWKATG KDRVVQHNNR TVGMIKTLIF HTGKSPCGER  120
TDWDSYVVCK VFQKEGLGPR KGAHCARPFN EEEWDDEEIG IPCAALTAPV PILPMTSDGS  180
VPNDNLPASG CTVSASISCL SGSLPSPGTV NPTGPNDQAA NDNDILPMLD IFNDDKWFEE  240
VYNPGQENIV EGASPSDDFF EGLEDYLAGF SSGQNTEFNT NGMRLLQNTG DIGNSDNLDF  300
IELNDLDTPL FYPITQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-29613518169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.438810.0root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G191300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531450.10.0NAC domain-containing protein 82 isoform X1
RefseqXP_028243981.10.0NAC domain-containing protein 82-like isoform X1
TrEMBLK7KR600.0K7KR60_SOYBN; Uncharacterized protein
STRINGGLYMA05G32470.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.43e-65NAC domain containing protein 82