PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G189700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 144aa MW: 16338.6 Da PI: 8.3917 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.8 | 6.6e-37 | 4 | 104 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk + rkC++dC++ pyfpa++p++fa+vh+++G snv k+l+++p+ re+a+++l++eA+ r++dPvyG++g+i+kl +q++++ Glyma.05G189700.1.p 4 RCAACKNQTRKCSSDCIFFPYFPANDPQRFACVHRIYGGSNVGKMLQQIPPYLREQAANTLYFEAQRRIQDPVYGCTGIISKLYEQINNT 93 6***************************************************************************************** PP DUF260 91 kaelallkeel 101 + la++++++ Glyma.05G189700.1.p 94 EIALAHIQTQI 104 *9999998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.386 | 3 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.8E-37 | 4 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MSSRCAACKN QTRKCSSDCI FFPYFPANDP QRFACVHRIY GGSNVGKMLQ QIPPYLREQA 60 ANTLYFEAQR RIQDPVYGCT GIISKLYEQI NNTEIALAHI QTQIACLKLQ VPQEKAESNF 120 NVLRAQSSGT TEFQWQSQVC WFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-32 | 2 | 104 | 9 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-32 | 2 | 104 | 9 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G189700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595718.1 | 2e-85 | LOB domain-containing protein 24 | ||||
Refseq | XP_028201029.1 | 2e-85 | LOB domain-containing protein 24-like | ||||
Swissprot | P59467 | 8e-40 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
Swissprot | P59468 | 8e-40 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A0R0K3Z9 | 1e-103 | A0A0R0K3Z9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G32320.2 | 1e-104 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 3e-42 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G189700.1.p |