PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G186700.1.p | ||||||||
Common Name | GLYMA_05G186700, LOC100817546 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 346aa MW: 38335.2 Da PI: 7.0503 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.1e-20 | 165 | 214 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + +r++lg+f tae+Aa+a+++a ++++g Glyma.05G186700.1.p 165 KYRGVRQRP-WGKWAAEIRDpF-----KaTRVWLGTFETAEDAARAYDQASLRFRG 214 8********.**********66.....56************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.2E-33 | 164 | 223 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.01E-34 | 165 | 224 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-23 | 165 | 223 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.014 | 165 | 222 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-35 | 165 | 228 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-13 | 165 | 214 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-12 | 166 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-12 | 188 | 204 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MKNNRDKEKG NDVDQSYRQH HTLSMPMMFS GLNREKEMSA MISALTHVVC GEDEHHGADY 60 SLLNHNINNT NSAVVGDDDF TVTSNMASGS MPPSSTCSSQ GGNSVLKRRR EYDNTNDFSR 120 GGSFPAISTI AESSSTVTRR TANTVYDYEY RTENVKVVEE EPRRKYRGVR QRPWGKWAAE 180 IRDPFKATRV WLGTFETAED AARAYDQASL RFRGNKAKLN FPENVRLRQQ QEPPLNLNPP 240 PPNHGAILSI PSTTVHTEAL QGSLGSSNFY EHSYSHLHEF PVSLYDQIAE STSTTMASHH 300 LQFLPPASSS TMTMTSPQAP PSIYPTHPAA WSSGYSYNSS SSASG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-24 | 164 | 225 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.18078 | 0.0 | leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G186700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095691 | 1e-165 | BT095691.1 Soybean clone JCVI-FLGm-25E4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014631268.1 | 0.0 | ethylene-responsive transcription factor ABR1 | ||||
Refseq | XP_028233244.1 | 0.0 | ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A0B2RP72 | 0.0 | A0A0B2RP72_GLYSO; Ethylene-responsive transcription factor ERF114 | ||||
TrEMBL | A0A0R0JXR9 | 0.0 | A0A0R0JXR9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G32040.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4933 | 32 | 54 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 2e-33 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G186700.1.p |
Entrez Gene | 100817546 |