PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G185400.1.p | ||||||||
Common Name | GLYMA_05G185400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 217aa MW: 24732 Da PI: 9.6677 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.2 | 5.2e-31 | 147 | 205 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYYrC + +C+vkk+ver aedp++v++tYeg+H h+ Glyma.05G185400.1.p 147 LDDGYKWRKYGQKVVKGTHHPRSYYRCIQDNCRVKKRVERFAEDPRMVITTYEGRHVHS 205 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-32 | 132 | 205 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-27 | 139 | 206 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.828 | 142 | 207 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-34 | 147 | 206 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-24 | 148 | 204 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSTTSHSIVH HSLFEEQDQM PTQIGFFPFP TNLTFPPLGC HQSSLKAFSS IAPSSSLVIS 60 QQDSVSNLTA ETLFSTTAQK SREDLTSSFR GAQFLSLHRL SVNPWALGEV ADCFSSKRTT 120 KMKKIKARRK VREPRFCFKT MSDMDELDDG YKWRKYGQKV VKGTHHPRSY YRCIQDNCRV 180 KKRVERFAED PRMVITTYEG RHVHSPSNDL EDSIST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-26 | 138 | 204 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 5e-26 | 138 | 204 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26847 | 1e-151 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G185400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090914 | 1e-148 | BT090914.1 Soybean clone JCVI-FLGm-5N5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237342.2 | 1e-138 | WRKY transcription factor 40 | ||||
Refseq | XP_028246516.1 | 1e-138 | probable WRKY transcription factor 13 isoform X1 | ||||
TrEMBL | I1K4S9 | 1e-161 | I1K4S9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G31910.1 | 1e-162 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4079 | 33 | 61 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 9e-55 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G185400.1.p |