PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G182500.1.p
Common NameGLYMA_05G182500, LOC100808443
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 371aa    MW: 42096.8 Da    PI: 7.7227
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G182500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.77.7e-1183112433
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                          +k +rr+++NReAAr+sR+RKka++++Le 
  Glyma.05G182500.1.p  83 DKTQRRLAQNREAARKSRLRKKAYVQQLES 112
                          799*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.1E-480140IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.8E-882129No hitNo description
PROSITE profilePS502178.682112IPR004827Basic-leucine zipper domain
PfamPF001707.2E-983116IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.21E-784123No hitNo description
PROSITE patternPS00036087102IPR004827Basic-leucine zipper domain
PfamPF141441.2E-29171245IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDATSSPFVS SRRMGVYDPI HQISTWEENF KSNDTNNLTV STSIIGEVDM KLDNQFQVQS  60
EDDTHGIFGT SVKYDQDTNR LTDKTQRRLA QNREAARKSR LRKKAYVQQL ESCRLKLLQL  120
EQEVDHAKQQ GLYIGNGLGS NNLGFAGSVN SGITLFKMEY GNWVEEQNRQ ILELRTALSS  180
HIGDIQLGTL VQGIMNHYTK LFGMKSAAAK ADVFYVMSGM WKTTAERFFL WIGGFRPSEL  240
LKVLVPLSEP LTEQQRFDAY GLEKSCQQAE DALSQGMEKL QQMLSDSVGP GQLVEGTHIP  300
QMDTAMERLE ALVSFVNQAD HLRQETLRQM YRILTIRQTG RFLLALGEYF QRLRALSKLW  360
INRPQFPGHA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.507830.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G182500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580295.10.0transcription factor TGA1-like isoform X1
RefseqXP_006580296.10.0transcription factor TGA1-like isoform X1
RefseqXP_006580297.10.0transcription factor TGA1-like isoform X1
RefseqXP_006580298.10.0transcription factor TGA1-like isoform X1
RefseqXP_006580300.10.0transcription factor TGA1-like isoform X1
RefseqXP_006580301.10.0transcription factor TGA1-like isoform X1
SwissprotQ392371e-171TGA1_ARATH; Transcription factor TGA1
TrEMBLK7KR050.0K7KR05_SOYBN; Uncharacterized protein
STRINGGLYMA05G31623.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Representative plantOGRP26791132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-174bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]