PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G179900.1.p | ||||||||
Common Name | GLYMA_05G179900, LOC100797648 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 313aa MW: 34944.1 Da PI: 5.0948 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.1 | 3.3e-21 | 116 | 166 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge Glyma.05G179900.1.p 116 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDNAAFKLRGE 166 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.89E-35 | 115 | 175 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-32 | 116 | 174 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-39 | 116 | 179 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.235 | 116 | 173 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-24 | 116 | 174 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.8E-11 | 117 | 128 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.6E-15 | 117 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 139 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MGTAIGMYSN NNIVPDFLDP YSEELMKALM PFMKSDYFSA SSSSSSRESH PSPLIPSNSL 60 PSSNQIRLNQ LTQDQILQIQ AQIHIQQQHV AQGQAHLGPK RVPMKHAGTA AKAAKLYRGV 120 RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE EAALAYDNAA FKLRGEFARL NFPHLRHHGA 180 FVFGEFGDYR PLPSSVDSKL QAICESLAKQ EEKPCCSVED VKPVIHAAEL AEVESDVAKL 240 NAEYVYPEFE DFKVENENPM LSSSVSGESS SPESGVTFLD FSDFSDSNNQ WDEMENFGLE 300 KFPSVEIDWA AI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-21 | 115 | 173 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.58371 | 0.0 | seed coat |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G179900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY296651 | 0.0 | AY296651.1 Glycine max DREB2 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003525060.1 | 0.0 | ethylene-responsive transcription factor ERF060 | ||||
Swissprot | O65665 | 5e-79 | ERF60_ARATH; Ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | I1K4K5 | 0.0 | I1K4K5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G31370.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 9e-56 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G179900.1.p |
Entrez Gene | 100797648 |