PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G178200.3.p
Common NameGLYMA_05G178200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 1092aa    MW: 123500 Da    PI: 6.1668
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G178200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.51.7e-55211363118
                 CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                          + ++rwl++ ei+aiL n++k+ +++e+++ p+sgsl+L++rk++ryfrkDG++w+kkkdgktvrE+he+LK g+v+vl+cyYah+een+
  Glyma.05G178200.3.p  21 EAQHRWLRPAEICAILSNHKKFLIASEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENE 110
                          669*************************************************************************************** PP

                 CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                          +f+rr+ywlLeeel++ivlvhy++vk
  Glyma.05G178200.3.p 111 NFRRRTYWLLEEELSHIVLVHYRHVK 136
                          ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.79215141IPR005559CG-1 DNA-binding domain
SMARTSM010761.3E-7418136IPR005559CG-1 DNA-binding domain
PfamPF038591.6E-4821134IPR005559CG-1 DNA-binding domain
PfamPF018335.2E-5508584IPR002909IPT domain
SuperFamilySSF812966.82E-16508593IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.103.4E-4509582IPR013783Immunoglobulin-like fold
CDDcd002041.56E-15690802No hitNo description
Gene3DG3DSA:1.25.40.209.3E-19690806IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.359693814IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.93E-19694805IPR020683Ankyrin repeat-containing domain
PfamPF127963.5E-8715810IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.671743775IPR002110Ankyrin repeat
SMARTSM002480.0034743772IPR002110Ankyrin repeat
SMARTSM00248110782811IPR002110Ankyrin repeat
SuperFamilySSF525408.5E-7907965IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001515915937IPR000048IQ motif, EF-hand binding site
PfamPF006120.052917936IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.492917945IPR000048IQ motif, EF-hand binding site
SMARTSM000150.16938960IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.584939963IPR000048IQ motif, EF-hand binding site
PfamPF006120.0033941958IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1092 aa     Download sequence    Send to blast
MAEARHYVPP SQLDIKQIIL EAQHRWLRPA EICAILSNHK KFLIASEPAH MPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVREAHER LKAGSVDVLH CYYAHGEENE NFRRRTYWLL  120
EEELSHIVLV HYRHVKGTKA NFTCAKENEE TLPYAQQTDK IMPKTEMETS LSSTLHPHSY  180
QVPSQTMDRS MNSSQASEYE EAESERPVEK ITPQPADSYS PRPLTNDQEK SPVIPGVNYI  240
SLTQDNKIKD IHNFGLTYES PKPLGFSSWE GILKNNAGSQ HVPFQPLFPG TQPDNMGINS  300
KFSQGHEIMV PYLTTSIAKQ HENGSLIQAE GNWQAYDVDS LRMSSWPIDS AYSGSSCDIT  360
CSNREQEVND VDLQKSLEQC LLHPYKQNKV FMQNDPQEKL LNEKEKIKSD LEANRILDGI  420
EDTYFTFKRT LLDGSPAEEG LKKLDSFNQW MSKELADVEE SNKPSTSGGY WDTVESENEV  480
GNTTIPSQGH LDTYVLDPSV SHDQLFSIID YSPSWAFEGS EIKVIISGRF LRSQHEAEQG  540
KWSCMFGEVE VPAEIIAKGV LCCHTPPHKA GRVPFYVTCS NRLACSEVRE FDFQVNYTPE  600
VNTTGENRGS TFDTFSIRFG ELLSLGHAFP QNSDSISVSE KSQLRSKINS LLREEEDDWD  660
KLLKLTQEED FSPENLQEQL LQNLLKDKLH AWLLQKITEE GKGPNILDEG GQGVLHFASA  720
LGYDWALEPT IVAGVNVNFR DVNGWTALHW AAFCGRERTV AFLISLGAAP GALTDPCPEH  780
PSGRTPADLA SANGHKGIAG YLAESSLSAH LTTLDLNRDA GENSGAKVVQ RVQNIAQVND  840
LDGLSYELSL KDSLAAVRNA THAAARIHQV FRMQSFQRKQ LKEYDDDKLG LSDERALSLV  900
KMNMKSHKSG PRDEPVHAAA VRIQNKFRSW KGRREFLMIR QRIVKIQAHV RGHQVRKSCG  960
KIIWSVGILE KVILRWRRKG SGLRGFKPEA NSEGTMIQDV SSTDDDYDVL KEGRKQTEQR  1020
LQKALARVKS MVQYPEARDQ YHRLLNVVTE IQENQVKHES SYNNSEEPRE FGDLNDLEAL  1080
LDEDIFMPTA T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hb5_A8e-1269483120157Engineered Protein
4hb5_B8e-1269483120157Engineered Protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.39900.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G178200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524262.10.0calmodulin-binding transcription activator 1-like isoform X2
TrEMBLA0A0R0K3U90.0A0A0R0K3U9_SOYBN; Uncharacterized protein
STRINGGLYMA05G31190.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains