PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G178200.2.p
Common NameGLYMA_05G178200, LOC100798875
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 1108aa    MW: 125358 Da    PI: 6.1074
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G178200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.41.8e-55211363118
                 CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                          + ++rwl++ ei+aiL n++k+ +++e+++ p+sgsl+L++rk++ryfrkDG++w+kkkdgktvrE+he+LK g+v+vl+cyYah+een+
  Glyma.05G178200.2.p  21 EAQHRWLRPAEICAILSNHKKFLIASEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENE 110
                          669*************************************************************************************** PP

                 CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                          +f+rr+ywlLeeel++ivlvhy++vk
  Glyma.05G178200.2.p 111 NFRRRTYWLLEEELSHIVLVHYRHVK 136
                          ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.79215141IPR005559CG-1 DNA-binding domain
SMARTSM010761.3E-7418136IPR005559CG-1 DNA-binding domain
PfamPF038591.7E-4821134IPR005559CG-1 DNA-binding domain
PfamPF018335.3E-5524600IPR002909IPT domain
SuperFamilySSF812967.0E-16524609IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.103.5E-4525598IPR013783Immunoglobulin-like fold
CDDcd002041.59E-15706818No hitNo description
Gene3DG3DSA:1.25.40.209.1E-19706822IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.359709830IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.08E-19710821IPR020683Ankyrin repeat-containing domain
PfamPF127963.6E-8731826IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.671759791IPR002110Ankyrin repeat
SMARTSM002480.0034759788IPR002110Ankyrin repeat
SMARTSM00248110798827IPR002110Ankyrin repeat
SuperFamilySSF525408.5E-7923981IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001515931953IPR000048IQ motif, EF-hand binding site
PfamPF006120.053933952IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.492933961IPR000048IQ motif, EF-hand binding site
SMARTSM000150.16954976IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.584955979IPR000048IQ motif, EF-hand binding site
PfamPF006120.0034957974IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1108 aa     Download sequence    Send to blast
MAEARHYVPP SQLDIKQIIL EAQHRWLRPA EICAILSNHK KFLIASEPAH MPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVREAHER LKAGSVDVLH CYYAHGEENE NFRRRTYWLL  120
EEELSHIVLV HYRHVKGTKA NFTCAKENEE TLPYAQQTDK IMPKTEMETS LSSTLHPHSY  180
QVPSQTMDRS MNSSQASEYE EAESAFNNHA SSEFYSFLEL ERPVEKITPQ PADSYSPRPL  240
TNDQEKSPVI PGVNYISLTQ DNKIKDIHNF GLTYESPKPL GFSSWEGILK NNAGSQHVPF  300
QPLFPGTQPD NMGINSKFSQ GHEIMVPYLT TSIAKQHENG SLIQAEGNWQ AYDVDSLRMS  360
SWPIDSAYSG SSCDITCSNR EQEVNDVDLQ KSLEQCLLHP YKQNKVFMQN DPQEKLLNEK  420
EKIKSDLEAN RILDGIEDTY FTFKRTLLDG SPAEEGLKKL DSFNQWMSKE LADVEESNKP  480
STSGGYWDTV ESENEVGNTT IPSQGHLDTY VLDPSVSHDQ LFSIIDYSPS WAFEGSEIKV  540
IISGRFLRSQ HEAEQGKWSC MFGEVEVPAE IIAKGVLCCH TPPHKAGRVP FYVTCSNRLA  600
CSEVREFDFQ VNYTPEVNTT GENRGSTFDT FSIRFGELLS LGHAFPQNSD SISVSEKSQL  660
RSKINSLLRE EEDDWDKLLK LTQEEDFSPE NLQEQLLQNL LKDKLHAWLL QKITEEGKGP  720
NILDEGGQGV LHFASALGYD WALEPTIVAG VNVNFRDVNG WTALHWAAFC GRERTVAFLI  780
SLGAAPGALT DPCPEHPSGR TPADLASANG HKGIAGYLAE SSLSAHLTTL DLNRDAGENS  840
GAKVVQRVQN IAQVNDLDGL SYELSLKDSL AAVRNATHAA ARIHQVFRMQ SFQRKQLKEY  900
DDDKLGLSDE RALSLVKMNM KSHKSGPRDE PVHAAAVRIQ NKFRSWKGRR EFLMIRQRIV  960
KIQAHVRGHQ VRKSCGKIIW SVGILEKVIL RWRRKGSGLR GFKPEANSEG TMIQDVSSTD  1020
DDYDVLKEGR KQTEQRLQKA LARVKSMVQY PEARDQYHRL LNVVTEIQEN QVKHESSYNN  1080
SEEPREFGDL NDLEALLDED IFMPTAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hb5_A7e-1271084720157Engineered Protein
4hb5_B7e-1271084720157Engineered Protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.39900.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G178200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524262.10.0calmodulin-binding transcription activator 1-like isoform X2
TrEMBLI1K4J10.0I1K4J1_SOYBN; Uncharacterized protein
STRINGGLYMA05G31190.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1