PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G175600.2.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 309aa    MW: 34738.4 Da    PI: 4.4948
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G175600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-182073356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         k+++++ +q+++Le+ Fe ++++  +++ +LA++lgL+ rqV vWFqNrRa++k
  Glyma.05G175600.2.p 20 KKRRLNVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWK 73
                         5668999**********************************************9 PP
2HD-ZIP_I/II1278e-4119111193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrl+ +qvk+LE++Fe e+kLep+rKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y +lk + ++L++++e+L ++
  Glyma.05G175600.2.p  19 EKKRRLNVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYGSLKLNFDTLQQDNEALLKQ 108
                          69**************************************************************************************** PP

          HD-ZIP_I/II  91 lke 93 
                          +ke
  Glyma.05G175600.2.p 109 IKE 111
                          987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-191477IPR009057Homeodomain-like
PROSITE profilePS5007117.2481575IPR001356Homeobox domain
SMARTSM003891.7E-171879IPR001356Homeobox domain
PfamPF000467.4E-162073IPR001356Homeobox domain
CDDcd000861.84E-162076No hitNo description
Gene3DG3DSA:1.10.10.601.5E-192282IPR009057Homeodomain-like
PRINTSPR000318.5E-64655IPR000047Helix-turn-helix motif
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PRINTSPR000318.5E-65571IPR000047Helix-turn-helix motif
PfamPF021834.5E-1775116IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MLEGLDEEGC VEEAGHHSEK KRRLNVDQVK ALEKNFEVEN KLEPDRKVKL AQELGLQPRQ  60
VAVWFQNRRA RWKTKQLERD YGVLKANYGS LKLNFDTLQQ DNEALLKQIK ELKSRLVQEE  120
NNNNTESDVS VKEEMIATLQ DSNPLCESAI PGSDSKELSY ECFNKSDEVG GGSVFPVDFK  180
DGSSDSDSSA ILNEENNNHS PNNNAAISSC GVLQSHGLLS SPSSSSMNNC FQFQKQYQTT  240
TQYVKMEEHN FLSADEACNF FSDEQAPTLQ CQFSLSDDVV DEVSRHRAQS MVYQCHIIEG  300
SDVIMMCQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16775RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.320000.0cotyledon| epicotyl| leaf| meristem| pod| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G175600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1842770.0AF184277.2 Glycine max homeodomain-leucine zipper protein 56 (Hdl56) mRNA, complete cds.
GenBankKT0311650.0KT031165.1 Glycine max clone HN_CCL_178 homeodomain/HOMEOBOX transcription factor (Glyma08g14130.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014631241.10.0homeobox-leucine zipper protein ATHB-6 isoform X1
RefseqXP_014631242.10.0homeobox-leucine zipper protein ATHB-6 isoform X2
SwissprotQ940J16e-69ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A368UIA70.0A0A368UIA7_SOYBN; Uncharacterized protein
STRINGGLYMA05G30940.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-58homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]