PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G175600.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 346aa    MW: 38839 Da    PI: 4.6269
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G175600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1857110356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+++++ +q+++Le+ Fe ++++  +++ +LA++lgL+ rqV vWFqNrRa++k
  Glyma.05G175600.1.p  57 KKRRLNVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWK 110
                          5668999**********************************************9 PP
2HD-ZIP_I/II126.71e-4056148193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrl+ +qvk+LE++Fe e+kLep+rKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y +lk + ++L++++e+L ++
  Glyma.05G175600.1.p  56 EKKRRLNVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYGSLKLNFDTLQQDNEALLKQ 145
                          69**************************************************************************************** PP

          HD-ZIP_I/II  91 lke 93 
                          +ke
  Glyma.05G175600.1.p 146 IKE 148
                          987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.02E-1942114IPR009057Homeodomain-like
PROSITE profilePS5007117.24852112IPR001356Homeobox domain
SMARTSM003891.7E-1755116IPR001356Homeobox domain
CDDcd000861.73E-1657113No hitNo description
PfamPF000468.8E-1657110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-1959119IPR009057Homeodomain-like
PRINTSPR000311.0E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000311.0E-592108IPR000047Helix-turn-helix motif
PfamPF021835.3E-17112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MKRLGSSDTL GALMTICPPT DEHSPRNNHV YGKEFQSMLE GLDEEGCVEE AGHHSEKKRR  60
LNVDQVKALE KNFEVENKLE PDRKVKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDYGV  120
LKANYGSLKL NFDTLQQDNE ALLKQIKELK SRLVQEENNN NTESDVSVKE EMIATLQDSN  180
PLCESAIPGS DSKELSYECF NKSDEVGGGS VFPVDFKDGS SDSDSSAILN EENNNHSPNN  240
NAAISSCGVL QSHGLLSSPS SSSMNNCFQF QKQYQTTTQY VKMEEHNFLS ADEACNFFSD  300
EQAPTLQCQF SLSDDVVDEV SRHRAQSMVY QCHIIEGSDV IMMCQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.320000.0cotyledon| epicotyl| leaf| meristem| pod| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G175600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311650.0KT031165.1 Glycine max clone HN_CCL_178 homeodomain/HOMEOBOX transcription factor (Glyma08g14130.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014631241.10.0homeobox-leucine zipper protein ATHB-6 isoform X1
SwissprotQ940J17e-79ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A368UI650.0A0A368UI65_SOYBN; Uncharacterized protein
STRINGGLYMA05G30940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.18e-69homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]