PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G166400.1.p
Common NameGLYMA_05G166400, LOC100806322
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 854aa    MW: 93958.1 Da    PI: 6.456
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G166400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-182481457
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           ++t+eq+e+Le+++ ++++ps ++r+++ +++    +++++q+kvWFqNrR +ek+
  Glyma.05G166400.1.p 24 YVRYTPEQVEALERVYVECPKPSSSRRQQIIRECpllaNIETKQIKVWFQNRRCREKQ 81
                         6789****************************************************97 PP
2START170.89.2e-541743822205
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +a+e++ e+++ka+ ++ +Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++   +l v+s g  g
  Glyma.05G166400.1.p 174 IAQETLVEFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLNVLSVVSAGngG 262
                          5788999***************************************************.8888888888********************* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++lm+++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+    s+++Rae+lpSg+li+++++g+s +++v+hvdl+ +
  Glyma.05G166400.1.p 263 TIELMYMQTYAPTTLAAaRDFWTLRYSTSLEDGSLVICERSLTSSTGGPTgpaASNFIRAEMLPSGYLIRSCEGGGSIIHIVDHVDLDVW 352
                          *************************************************9999************************************* PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqce 205
                          +++++lr+l++s  + ++k ++a+l++ ++
  Glyma.05G166400.1.p 353 SVPEVLRPLYESPKFLAQKLTTAALRHARQ 382
                          *************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003896.0E-162086IPR001356Homeobox domain
CDDcd000863.92E-162383No hitNo description
SuperFamilySSF466895.13E-162385IPR009057Homeodomain-like
PfamPF000463.7E-162481IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-172581IPR009057Homeodomain-like
PROSITE profilePS5007114.9652682IPR001356Homeobox domain
CDDcd146862.92E-675114No hitNo description
PROSITE profilePS5084824.971164364IPR002913START domain
CDDcd088751.94E-67168384No hitNo description
Gene3DG3DSA:3.30.530.208.6E-20173356IPR023393START-like domain
SMARTSM002341.4E-49173383IPR002913START domain
SuperFamilySSF559618.65E-35174385No hitNo description
PfamPF018525.1E-51174382IPR002913START domain
PfamPF086702.6E-48708852IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MALCMQSQQR DSASNKLLMD CGKYVRYTPE QVEALERVYV ECPKPSSSRR QQIIRECPLL  60
ANIETKQIKV WFQNRRCREK QRKEASRLQT VNRKLSSMNK LLMEENDRLQ KQVSQLVYDN  120
GFMKQQIHTA SATTTTTTDN SCESVVVSGQ HQPQNPKTQH PQWDANNPAG LLAIAQETLV  180
EFLSKATGTA VNWVQMIGMK PGPDSIGIVA VSRNCSGVAA RACGLVSLEP TKVAEILKDR  240
PSWYRDCRCL NVLSVVSAGN GGTIELMYMQ TYAPTTLAAA RDFWTLRYST SLEDGSLVIC  300
ERSLTSSTGG PTGPAASNFI RAEMLPSGYL IRSCEGGGSI IHIVDHVDLD VWSVPEVLRP  360
LYESPKFLAQ KLTTAALRHA RQIAQESSGD VHYGGGRQPA VLRTFSQRLC KGFNDAVNGF  420
VDDGWSLMGN DGVEDVTIAI NSSPNKFFGS HYNTSMLPAF GGGVMCAKAS MLLQNVPPAL  480
LVRFLREHRS EWANYEVDAY SSACLKASPY AVPCARPSGF PSSHVIIPLA HTIEHEEFLE  540
VVRIEGNAFP PDDVAWACDM YLMQLCSGID ENAIGACAQL VFAPIDESFA DDALLLPSGF  600
RIIPLDPKTD GLASTRTLDL ASTLETGSGN ARSAGESDSN NYNLRSVLTI AFQFTFENHL  660
RDNVAVMARQ YVRNVVRSVQ RVAMAIAPSR LSTQLGPKSF PGPPEALTLA RWICRSYRLH  720
TCTELFSVES TSGDAILKQL WHHPDAILCC SVKTDASPVF TFANQAGLDM LETTLVALQD  780
IMLDKVLDEA GRKVLCIEFS KIMQQGFAYL PAGICVSSMN RPVSYEQAIA WKVLDDDDSN  840
HCLAFVFMNW SFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.380820.0cotyledon| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G166400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524993.10.0homeobox-leucine zipper protein ATHB-14-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLI1K4760.0I1K476_SOYBN; Uncharacterized protein
STRINGGLYMA05G30000.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]