PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G166100.1.p | ||||||||
Common Name | GLYMA_05G166100, LOC100805791 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YA | ||||||||
Protein Properties | Length: 218aa MW: 24270.9 Da PI: 9.1736 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 101.6 | 7.4e-32 | 122 | 178 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq Rak+e+e+k+ +++rkpylheSRhkhAl RpRg+gGrF Glyma.05G166100.1.p 122 EEPVFVNAKQYHGILRRRQYRAKAESENKI-IRNRKPYLHESRHKHALTRPRGCGGRF 178 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.8E-36 | 120 | 181 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.622 | 121 | 181 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.6E-27 | 123 | 178 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.2E-23 | 124 | 146 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 126 | 146 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.2E-23 | 155 | 178 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MVWTVLRASR NMTSAHDLTD NEDDGQQQSE SPMQPPSVNG ISDPGISTQN VNVQYAAPGQ 60 LGTGHAMVPH VYPYPDPYYR SIFAPYDTQP YPPQAYSGQP MVHLQLMGIQ QAGVPLPTDA 120 VEEPVFVNAK QYHGILRRRQ YRAKAESENK IIRNRKPYLH ESRHKHALTR PRGCGGRFLN 180 SKKDKNQNDD VASADKSQSN ININSNKNDQ TSSDRAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-21 | 121 | 182 | 1 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.57510 | 0.0 | cotyledon| leaf| somatic embryo |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G166100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095253 | 0.0 | BT095253.1 Soybean clone JCVI-FLGm-7E1 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006580212.1 | 1e-162 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Swissprot | Q84JP1 | 5e-68 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | I1K472 | 1e-161 | I1K472_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G29970.1 | 1e-161 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5379 | 33 | 55 | Representative plant | OGRP680 | 16 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 1e-54 | nuclear factor Y, subunit A7 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G166100.1.p |
Entrez Gene | 100805791 |
Publications ? help Back to Top | |||
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