PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G163200.1.p
Common NameGLYMA_05G163200, LOC100800107
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27414 Da    PI: 10.2235
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G163200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.81.9e-302574150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Glyma.05G163200.1.p 25 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74
                         79***********************************************8 PP
2K-box103.52.7e-3496189699
                K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                          g+s++ea+a+ ++qe+akL+ +i+nLq+ + +++Ge+L++++ k+L++Le++Lek++++iRskKne+l+++ie+++k+e  l+++n+ Lr
  Glyma.05G163200.1.p  96 GQSASEANAQFYHQEAAKLRVQISNLQNHNSQMMGEGLSTMNGKDLKNLETKLEKGISRIRSKKNEMLFAEIEHMKKREIHLNNDNQLLR 185
                          445899************************************************************************************ PP

                K-box  96 kkle 99 
                          +k++
  Glyma.05G163200.1.p 186 AKIA 189
                          **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.7261777IPR002100Transcription factor, MADS-box
SMARTSM004328.8E-421776IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-321889IPR002100Transcription factor, MADS-box
CDDcd002651.43E-431891No hitNo description
PRINTSPR004042.6E-321939IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003192.1E-262673IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-323954IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-325475IPR002100Transcription factor, MADS-box
PfamPF014862.9E-24101188IPR002487Transcription factor, K-box
PROSITE profilePS5129714.076104194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MALPNQSMSS ESPQRKMGRG KIEIKRIENT TSRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSNRGRL YEYANNSVKA SIERYKKASS DLSTGGQSAS EANAQFYHQE AAKLRVQISN  120
LQNHNSQMMG EGLSTMNGKD LKNLETKLEK GISRIRSKKN EMLFAEIEHM KKREIHLNND  180
NQLLRAKIAA GERSHHNVNG LSGSISYESM QSQFDSRGFF QVTGLQPNNN QYAGQDNMSL  240
QFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-201789173Myocyte-specific enhancer factor 2B
1tqe_Q4e-201789173Myocyte-specific enhancer factor 2B
1tqe_R4e-201789173Myocyte-specific enhancer factor 2B
1tqe_S4e-201789173Myocyte-specific enhancer factor 2B
6c9l_A4e-201789173Myocyte-specific enhancer factor 2B
6c9l_B4e-201789173Myocyte-specific enhancer factor 2B
6c9l_C4e-201789173Myocyte-specific enhancer factor 2B
6c9l_D4e-201789173Myocyte-specific enhancer factor 2B
6c9l_E4e-201789173Myocyte-specific enhancer factor 2B
6c9l_F4e-201789173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.374340.0flower
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G163200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0934340.0BT093434.1 Soybean clone JCVI-FLGm-14I9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580183.11e-180floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_028232906.11e-180floral homeotic protein AGAMOUS-like isoform X1
SwissprotQ435851e-111AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLA0A445KP971e-179A0A445KP97_GLYSO; Floral homeotic protein AGAMOUS isoform A
TrEMBLK7KQK51e-179K7KQK5_SOYBN; Uncharacterized protein
STRINGGLYMA05G29595.11e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-108MIKC_MADS family protein
Publications ? help Back to Top
  1. Cheung AY,Zhan XY,Wang H,Wu HM
    Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein.
    Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8
    [PMID:8632979]