PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G160800.1.p | ||||||||
Common Name | GLYMA_05G160800, LOC100793777 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 256aa MW: 28704.1 Da PI: 6.52 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.9 | 5.5e-30 | 85 | 143 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers dp+++++tY+++Hnh+ Glyma.05G160800.1.p 85 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSCVDPTMLVVTYSSDHNHP 143 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.1E-31 | 79 | 145 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-26 | 82 | 145 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-34 | 84 | 144 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.755 | 85 | 145 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-25 | 86 | 143 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDSKFRKKNR NVNSYTSEQD QDTDIAQENL AESPPSSTVF NIDGLVPSPT SSSKRRRAIQ 60 KRVVQIPMKE TEGCRLKGES NTPPSDSWAW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK 120 QVERSCVDPT MLVVTYSSDH NHPWPPSRNH ARPTKKPEPV PDPVEPEEKF ADESMITTAE 180 ELGWLGEMEA TSSTVLESPF MATTYHADVA LIPMREEDES LFADLGELPE CSVVFRQGLL 240 AERRRYTAPW CGTTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 6e-20 | 61 | 145 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 6e-20 | 61 | 145 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.30826 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G160800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019584 | 0.0 | EU019584.1 Glycine max WRKY48 (WRKY48) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003524970.1 | 0.0 | probable WRKY transcription factor 65 | ||||
Refseq | XP_028232876.1 | 0.0 | probable WRKY transcription factor 65 | ||||
Swissprot | Q9LP56 | 2e-73 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A0A445KP63 | 0.0 | A0A445KP63_GLYSO; Putative WRKY transcription factor 65 | ||||
TrEMBL | I1K416 | 0.0 | I1K416_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G29310.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2770 | 34 | 75 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 2e-75 | WRKY DNA-binding protein 65 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G160800.1.p |
Entrez Gene | 100793777 |
Publications ? help Back to Top | |||
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