PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G157400.1.p
Common NameGLYMA_05G157400, LOC100803832
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 250aa    MW: 28031.4 Da    PI: 8.189
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G157400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552.1e-172373155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++ GVr++  +g+W+AeI+d s   k+ r +lg++ taeeAa+a+++a+  l+g
  Glyma.05G157400.1.p 23 PKFVGVRQRA-SGKWAAEIKDTS---KKIRLWLGTYQTAEEAARAYDEAACLLRG 73
                         799****999.7*********42...36**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.51E-312380No hitNo description
PfamPF008471.9E-122373IPR001471AP2/ERF domain
PROSITE profilePS5103219.522481IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-272481IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-192482IPR016177DNA-binding domain
SMARTSM003802.9E-332487IPR001471AP2/ERF domain
PRINTSPR003674.0E-72536IPR001471AP2/ERF domain
PRINTSPR003674.0E-74763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEYQNQRAKE GRFCEKLKIK NRPKFVGVRQ RASGKWAAEI KDTSKKIRLW LGTYQTAEEA  60
ARAYDEAACL LRGSNTRTNF STQGCGVATN SPISLKLRNL LDRKAMSNQS QSQIQRQSSM  120
ISSTFQGADT SASPNVSAIN KIMVMENYSA CSSEGKSLFL VQNHQVCDNP YGLDMNMINC  180
STGITPNTSQ FDYSWPLAQQ RINELPISKD DFGLNAERQL SGYATNECHE EDTYAYDVNY  240
PLSHFFCFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1324871481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root hairs and leaves. {ECO:0000269|PubMed:17827349}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs). Binds to the GCC box (NF-responsive box) of ENOD11 promoter. May act as transcriptional repressor of NF-responsive box-containing target gene promoters in root hairs. {ECO:0000269|PubMed:17827349}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G157400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Nod factors in root hairs. {ECO:0000269|PubMed:17827349}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524198.10.0ethylene-responsive transcription factor ERN3
SwissprotA9Y0K91e-100ERN3_MEDTR; Ethylene-responsive transcription factor ERN3
TrEMBLK7KQG60.0K7KQG6_SOYBN; Uncharacterized protein
STRINGGLYMA05G29011.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF156461010
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-26related to AP2 11
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]