PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G142000.6.p
Common NameGLYMA_05G142000, LOC100816799
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 479aa    MW: 52802.3 Da    PI: 7.8475
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G142000.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.35.6e-38472012134
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasecea 75 
                           g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL++ a  +i el+++                +         
  Glyma.05G142000.6.p  47 SGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSASDSISELPSLnnfpdtpksddhekraN--------- 127
                          689*************************************************************87766555444433331......... PP

                  TCP  76 esssssas...................nsssgkaaksaakskksqksaasalnlak.esrakararare.rtrekmrikn 134
                                ++                   n+s++ + +++ +s+ s++s+ s l+l++ + r kar+rare  t+ek + kn
  Glyma.05G142000.6.p 128 ------TDvaagavdgenyenengnnnNQSQNMSLSKSGCSSTSETSKGSGLSLSRsDIRVKARERARErTTKEKEKEKN 201
                          ......222222233333322222221334446666677999999999999****99999*********55566665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.2E-4148198IPR005333Transcription factor, TCP
PROSITE profilePS5136930.60949107IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.384178196IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MEEEDEIQAQ KVRRRRGSDG ESTNRFHSSW HHHHHHSSRI IRVSRASGGK DRHSKVMTSK  60
GLRDRRVRLS VTTAIQFYDL QDRLGYDQPS KAVEWLIKSA SDSISELPSL NNFPDTPKSD  120
DHEKRANTDV AAGAVDGENY ENENGNNNNQ SQNMSLSKSG CSSTSETSKG SGLSLSRSDI  180
RVKARERARE RTTKEKEKEK NESHHHHSNV VVPHHRHHHH HNPVSQTASF TELLTGGIPK  240
GCDDEEPNNM MMFNKEAAAA SSGRQQWCSS SSAAAAAPMD YFLGPSSSRT TTTPPHNHHH  300
HHHQYSSSGG FSLAQIQLGH SLPEAMNHNV SAFNNNVSGE NQNHSSSDPH LQQQQHFSFI  360
PDHLMSAVVT SSSHHQPSGS DYNLNFTMSS GLAGYNRGTL QSNSPSLLPH LQRFSPLDGS  420
TVPFFIGAAP SAAVAAPAME NNTTTTNNHH HHQFSSGFDG SRLQLYYGHS DQKGKAKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-2454108155Putative transcription factor PCF6
5zkt_B9e-2454108155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.442280.0cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G142000.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580095.10.0transcription factor TCP2
RefseqXP_006580099.10.0transcription factor TCP2
RefseqXP_006580101.10.0transcription factor TCP2
RefseqXP_014631150.10.0transcription factor TCP2
RefseqXP_014631151.10.0transcription factor TCP2
TrEMBLK7KQ720.0K7KQ72_SOYBN; Uncharacterized protein
STRINGGLYMA05G27367.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2