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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.05G137100.1.p |
| Common Name | LOC100814354 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
BBR-BPC |
| Protein Properties |
Length: 280aa MW: 30943.5 Da PI: 10.0082 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.05G137100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 318.1 | 2.7e-97 | 1 | 279 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalver 77
mddd + n+gyyep +lglqlm i+erd+k+ r+ + l++ ++++++rd ++ rd++++
Glyma.05G137100.1.p 1 MDDDVLNMPNWGYYEPF--RGGHLGLQLMPGITERDTKPflpgRDPAM-LMGANGTFHPRDcavseapmpLNY-VRDNWINP-------- 78
899988779******98..4579******************9888888.99**********777777766666.66777776........ PP
GAGA_bind 78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakk 166
+++++++++ +n +++ vl++t+ + +lq ++++ ++ + +e ++ ++ke ++kkrq++ ++kakk
Glyma.05G137100.1.p 79 RDRFFNMQQPTN-------PSYAVLPETSGAPNLQI-----IQPPDSSsDEKVDRVE------EVAVKKEGGQSKKRQTKGALSTPKAKK 150
567888888555.......568999******99998.....3332222112222233......344444445555455444444444444 PP
GAGA_bind 167 kkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRia 256
++k +k++ +++ +r+k +kk+++lv+ng+++D+s+lP+PvCsCtGa++qCY+WG+GGWqSaCCtt++S+yPLP+s krrgaRia
Glyma.05G137100.1.p 151 PRK----PKDNGNAPV--QRAKPPKKTMELVINGIDMDISGLPTPVCSCTGAPQQCYRWGCGGWQSACCTTNVSIYPLPMSMKRRGARIA 234
444....334667777..689********************************************************************* PP
GAGA_bind 257 grKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
grKmSqgafkk+LekLaaeGy+++np+DLk+hWA+HGtnkfvtir
Glyma.05G137100.1.p 235 GRKMSQGAFKKVLEKLAAEGYNFANPIDLKTHWARHGTNKFVTIR 279
********************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MDDDVLNMPN WGYYEPFRGG HLGLQLMPGI TERDTKPFLP GRDPAMLMGA NGTFHPRDCA 60
VSEAPMPLNY VRDNWINPRD RFFNMQQPTN PSYAVLPETS GAPNLQIIQP PDSSSDEKVD 120
RVEEVAVKKE GGQSKKRQTK GALSTPKAKK PRKPKDNGNA PVQRAKPPKK TMELVINGID 180
MDISGLPTPV CSCTGAPQQC YRWGCGGWQS ACCTTNVSIY PLPMSMKRRG ARIAGRKMSQ 240
GAFKKVLEKL AAEGYNFANP IDLKTHWARH GTNKFVTIR*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
