PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G123600.1.p
Common NameGLYMA_05G123600, LOC100776919
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 431aa    MW: 47205.1 Da    PI: 5.0829
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G123600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.59e-31235293259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++k+s++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  Glyma.05G123600.1.p 235 SDLWAWRKYGQKPIKDSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 293
                          699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-31228295IPR003657WRKY domain
PROSITE profilePS5081132.443229295IPR003657WRKY domain
SuperFamilySSF1182901.83E-26232295IPR003657WRKY domain
SMARTSM007746.5E-38234294IPR003657WRKY domain
PfamPF031061.2E-25236293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDNYQGDLSD IIRASGASYG TCSTGTPSSE AANPFSRGHL QFSSDPMIFS CVLEGFNSNF  60
GDPFSNMRDP FLHELDLPPS AYFNITTSSS AEMSSSGALE EATCFGGGVV AGSSSSSSNS  120
CVLAQKILED DDMRRPCNSI FSNMIQISPN DKLPISPAVD ALSRALKPSS MVISGDNMID  180
SKTSIDHCLV DNTEVQISSP RNPGLKRRKS QAKKSICVPA PTAPNSRRSG EVVPSDLWAW  240
RKYGQKPIKD SPYPRGYYRC SSSKGCPARK QVERSRTDPN MLVITYTSEH NHPWPTHRNA  300
LAGSSRSQPS KNNNIAASKN EEEEEEESNS GSNNVNNSAF VREEEKQLEM DDGEFSDIGI  360
PYCKPISKMK NSQQLDQGLL AELGEIEFAD SVNLLSPPQG FDNQKRESNT LDSFHFFDWR  420
GDNSTKYHLV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-23209296280Disease resistance protein RRS1
5w3x_D2e-23209296280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G123600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580027.10.0probable WRKY transcription factor 35
TrEMBLK7KPU90.0K7KPU9_SOYBN; Uncharacterized protein
STRINGGLYMA05G25331.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-76WRKY DNA-binding protein 35