PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G123000.1.p
Common NameGLYMA_05G123000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 486aa    MW: 53865.8 Da    PI: 5.77
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G123000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.43.3e-24250304154
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYeg 54 
                          ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ +d +++++  +g
  Glyma.05G123000.1.p 250 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCIDDMSILITPMKG 304
                          58***************************99****************99987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-25235304IPR003657WRKY domain
SuperFamilySSF1182903.79E-22243304IPR003657WRKY domain
PROSITE profilePS5081122.297245304IPR003657WRKY domain
SMARTSM007748.4E-26250310IPR003657WRKY domain
PfamPF031064.1E-21251302IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MGRSREKPTK MEIDLSLKID TDDEHKEEED ERVKEDEEQE MAQIQDNNKE EIPEATAGEI  60
EDDASVIETS LQDNTKTKEL SVLQMEMESM KEENKVLRKV VEQTMKDYYD LQMKFSAIQE  120
NNKRKDHEIS LSLQDIATTS GEGPSRILEI FNKQMQSAPS PPHPDHDDDS LSESELGLSL  180
RLQPSTSHHK ESDVGNNKED KNDQQLASYA SVQNKLQRTN CLPGITTHAA SPPNRKARVS  240
VRARCEAATM NDGCQWRKYG QKIAKGNPCP RAYYRCTVAP GCPVRKQVQR CIDDMSILIT  300
PMKGHITITP SSAAASFMLL DSSNPISDGT STFTQAPFPY NTFHSLNPAS NFRSISPGDP  360
SKGIVLDLTS NLNEPPLRFS SGSSSNTTTD PRFSWMQNKY QGGGAIAMNN TFHKPRALDI  420
HDRIWKGEES NNNKPLDHDN VSSIASDPKF RVAVAAAITS LMNKESHATH PIGTSFGPRS  480
GQNGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-15237304167WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G123000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968480.0BT096848.1 Soybean clone JCVI-FLGm-15D10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028232370.10.0probable WRKY transcription factor 9
TrEMBLA0A0R0JZK70.0A0A0R0JZK7_SOYBN; Uncharacterized protein
STRINGXP_007159029.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.16e-60WRKY DNA-binding protein 9