PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G117000.1.p
Common NameGLYMA_05G117000, LOC100795682
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 1089aa    MW: 121941 Da    PI: 5.6573
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G117000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.91.5e-56211363118
                 CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                          + ++rwl++ ei++iL n++ +++t+e+++ p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een+
  Glyma.05G117000.1.p  21 EAQHRWLRPAEICEILRNYQMFQITSEPPNGPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENE 110
                          349*************************************************************************************** PP

                 CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                          +fqrr+yw+Le ++ +iv+vhyl+vk
  Glyma.05G117000.1.p 111 NFQRRSYWMLEPDMMHIVFVHYLDVK 136
                          ***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.48515141IPR005559CG-1 DNA-binding domain
SMARTSM010764.6E-8218136IPR005559CG-1 DNA-binding domain
PfamPF038591.3E-5021135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.1E-5502590IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.31E-16504590IPR014756Immunoglobulin E-set
PfamPF018337.1E-6504589IPR002909IPT domain
SuperFamilySSF484039.95E-16694798IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-15698799IPR020683Ankyrin repeat-containing domain
CDDcd002045.13E-12702792No hitNo description
PROSITE profilePS5029717.263704812IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.377737769IPR002110Ankyrin repeat
SMARTSM000154.2911933IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.206912941IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.04E-7913962IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0076914932IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0071934956IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.285935959IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-4937956IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1089 aa     Download sequence    Send to blast
MAERSCFGLG PRLDLQQLQL EAQHRWLRPA EICEILRNYQ MFQITSEPPN GPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEENE NFQRRSYWML  120
EPDMMHIVFV HYLDVKVNKT NVGGKTYSDE VTSDSQKSSS LSSGFPRNYG SVPSGSTDSM  180
SPTSTLTSLC EDADSEDIHQ ASSGLHSYRE SQNLGNDRPM DKIDARSNSS YPMHPFSGDH  240
GQLPVSGAEY IPHVLGDKSR ASDTTYIEGQ RAQGIASWDN TMEQSAGEYA DPSLVSSTTI  300
PSSAVGNILE ENHTVPGKLL GRKNALTEEE RGSQPVQSNW QIPFEDNTGE LPNWGFTQSL  360
GLEFGSDYGA SLLGDVTNNA GPEIVPELFT FNGELKEQSV HQNFSKLYTH GQSQPTLKSN  420
SEYEVPGEAS INYALTMRRG LLDGEESLKK VDSFSRWMTK EFAGVDDLHM QSSPGISWST  480
DECGDVIDDT SLNLSLSQDQ LFSINDFSPK WAYAESEIEV LIVGTFLKSQ PVVAKCNWSC  540
MFGEVEVPAE VLADGILCCQ APPHKIGRVP FYVTCSNRFA CSEVREFEYR EGFDRNIQFA  600
DCFNNSTEMV LHLRLVGLLS LNSVRTSNQV FEGDMDKRSL IFKLISLKEE EEYSSKEETT  660
AEMDISKHKL KELMFHKQVK EKLYSWLLHK VTETGKGPLV LDEEGQGVLH LIAALGYDWA  720
INPIITAGVN INFRDVNGWT ALHWAAFCGR ERTVAVLVSM GAAAGAWTDP CPEFPSGRSP  780
ADLASSKGHK GISGFLAESL LTGHLESLTM DENKDGRKET SGTKVVQTAS ERTATPVLYG  840
DIPDAICLKD SLNAVRNATQ AADRIYQVFR MQSFQRKQFA QYEDDEFGLS DQQALSLLAS  900
KTCKSGQGEG LANAAAIQIQ KKFRGWTKRK EFLIIRQRIV KIQAHVRGHQ VRKQYKPIIW  960
SVGILEKVIL RWRRKGSGLR GFRPAALNKV PEQPSESPKE DDYDYLKEGR KQSEVKFKKA  1020
LSRVKSMVQY PEARAQYRRV LNVVEDFRQT KGGNLNLINS EETVDGVEDL IDIDMLLDDE  1080
NFLPIAFD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.432230.0cotyledon| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G117000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579985.10.0calmodulin-binding transcription activator 2
RefseqXP_028232291.10.0calmodulin-binding transcription activator 2-like isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A445KMB80.0A0A445KMB8_GLYSO; Calmodulin-binding transcription activator 2 isoform A
TrEMBLK7KPP60.0K7KPP6_SOYBN; Uncharacterized protein
STRINGGLYMA05G24430.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74062642
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]