PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G112200.1.p | ||||||||
Common Name | GLYMA_05G112200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LSD | ||||||||
Protein Properties | Length: 124aa MW: 12889.4 Da PI: 7.4762 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.7 | 8e-13 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL +P GA+sV+Ca+C++V Glyma.05G112200.1.p 28 CSGCRNLLVFPVGATSVCCAVCNAV 52 ************************9 PP | |||||||
2 | zf-LSD1 | 47.1 | 3.7e-15 | 67 | 91 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Glyma.05G112200.1.p 67 CGGCHTLLMYIRGATSVQCSCCHTV 91 ************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.1E-12 | 25 | 55 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.5E-10 | 28 | 52 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 6.6E-15 | 64 | 93 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.0E-12 | 67 | 91 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MSFPLAPYPT PPAPYTPPAN GVQSQLVCSG CRNLLVFPVG ATSVCCAVCN AVTAVPPPGT 60 EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEGIVL LIVSLRFKEL CCVCAHACMM 120 DRL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G112200.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090415 | 1e-156 | BT090415.1 Soybean clone JCVI-FLGm-4M18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021593714.1 | 2e-56 | protein LOL1 | ||||
Refseq | XP_021593716.1 | 2e-56 | protein LOL1 | ||||
Refseq | XP_021593717.1 | 2e-56 | protein LOL1 | ||||
Refseq | XP_021593718.1 | 2e-56 | protein LOL1 | ||||
Swissprot | Q93ZB1 | 1e-47 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A0R0JTR3 | 5e-82 | A0A0R0JTR3_SOYBN; Uncharacterized protein | ||||
STRING | cassava4.1_018557m | 8e-56 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8187 | 33 | 46 | Representative plant | OGRP1146 | 17 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 1e-33 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G112200.1.p |
Publications ? help Back to Top | |||
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