PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G110900.2.p
Common NameGLYMA_05G110900, Glyma05g23530.1, LOC100788128
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 362aa    MW: 39754.7 Da    PI: 5.9977
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G110900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-11183228454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+L
  Glyma.05G110900.2.p 183 DHIMAERKRREKLSQSFIALAALVPGL-----KKMDKASVLGDAIKYVKEL 228
                          699************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.478179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9183228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-16183244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-12184232No hitNo description
SuperFamilySSF474594.97E-16184245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-13185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDDYNLFPDE CPLNLNLFDD QEFLSQDIAS ALQEQTQTLQ QSLSSECPSK TVSNSSTDET  60
TFDFERPAKL LKTTTSSSCC NSDSSTITKS LSPKLSPSSS FSSFQSQILS FDNPNPTSSS  120
NTTTQFYGFD CTLNPTQNEM VSVSVPNMRK PRFPTQTAKG SPKNQNFETK TSHGKRSPAH  180
AQDHIMAERK RREKLSQSFI ALAALVPGLK KMDKASVLGD AIKYVKELKE RLTVLEEQSK  240
KSRAESVVVL NKPDLSGDDD SSSCDESIGA DSVSDSLFEV ESRVSGKEML LRIHCQKQKG  300
LLVKLLAEIQ SHHLFVANSS VLPFGDSILD ITIVAQMGES YNLTTKELVK NLRVAALKIL  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-13183257880Transcription factor MYC2
5gnj_B5e-13183257880Transcription factor MYC2
5gnj_E5e-13183257880Transcription factor MYC2
5gnj_F5e-13183257880Transcription factor MYC2
5gnj_G5e-13183257880Transcription factor MYC2
5gnj_I5e-13183257880Transcription factor MYC2
5gnj_M5e-13183257880Transcription factor MYC2
5gnj_N5e-13183257880Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187192ERKRRE
2188193RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.378320.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G110900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311060.0KT031106.1 Glycine max clone HN_CCL_80 bHLH transcription factor (Glyma05g23530.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579969.10.0transcription factor bHLH18
TrEMBLI1K2I70.0I1K2I7_SOYBN; BHLH transcription factor
STRINGGLYMA05G23530.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-50bHLH family protein
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]