PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G109500.1.p
Common NameGLYMA_05G109500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 306aa    MW: 33662.2 Da    PI: 8.4949
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G109500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-18157211256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ ++tkeq   Lee F+++++++ ++++ L+k+l+L  rqV vWFqNrRa+ k
  Glyma.05G109500.1.p 157 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALSKQLNLRPRQVEVWFQNRRARTK 211
                          788899***********************************************98 PP
2HD-ZIP_I/II1231.4e-39157246191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl+keq++lLEesF+++++L+p++K++l+++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +
  Glyma.05G109500.1.p 157 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALSKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-A 245
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Glyma.05G109500.1.p 246 L 246
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.248153213IPR001356Homeobox domain
SMARTSM003891.2E-15155217IPR001356Homeobox domain
SuperFamilySSF466896.84E-18156221IPR009057Homeodomain-like
PfamPF000467.2E-16157211IPR001356Homeobox domain
CDDcd000861.16E-16157214No hitNo description
Gene3DG3DSA:1.10.10.602.5E-17157211IPR009057Homeodomain-like
PROSITE patternPS000270188211IPR017970Homeobox, conserved site
SMARTSM003402.8E-25213256IPR003106Leucine zipper, homeobox-associated
PfamPF021836.0E-10213247IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MLAANSGLQL ILGLALTATT TTTPSSPPSI SNKLDHVDHH HHLITLRPTT KSSYNSSEAE  60
PSLTLGLSRE SYLKVPKSII GHNNNKVSSC DDPLDLSTQT NSPHHSAVSS FSSGRVKRER  120
DLSCEEVVDA KEIDQRDLSC EGIIRATEEE EDGAATRKKL RLTKEQSALL EESFKQHSTL  180
NPKQKQALSK QLNLRPRQVE VWFQNRRART KLKQTEVDCE FLKKCCETLT DENRRLQKEL  240
QELKALKLAQ PLYMPMPAAT LAMCPSCERL GGSAVNGAGG SPKTSFSMAP KPHFFNPFAN  300
PSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161TRKKLRL
2205213RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.554200.0cotyledon| flower| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G109500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311730.0KT031173.1 Glycine max clone HN_CCL_18 homeodomain/HOMEOBOX transcription factor (Glyma17g16930.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025984227.10.0homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-86HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLI1K2H50.0I1K2H5_SOYBN; Uncharacterized protein
STRINGGLYMA05G23150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-75HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]