PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G109200.1.p
Common NameGLYMA_05G109200, LOC100792374
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 336aa    MW: 38201.9 Da    PI: 8.3182
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G109200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-171462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
  Glyma.05G109200.1.p 14 RGPWSPEEDTRLKSYIEEHGTGgNWIALPQKLGLKRCGKSCRLRWLNYL 62
                         89*********************************************97 PP
2Myb_DNA-binding39.51.3e-1269111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g++++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Glyma.05G109200.1.p  69 GNFSEEEDNIICSLYVTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                          89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.633962IPR017930Myb domain
SuperFamilySSF466895.01E-2711109IPR009057Homeodomain-like
SMARTSM007171.0E-121364IPR001005SANT/Myb domain
PfamPF002493.7E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-251569IPR009057Homeodomain-like
CDDcd001671.95E-91662No hitNo description
PROSITE profilePS5129422.07263117IPR017930Myb domain
SMARTSM007175.9E-1267115IPR001005SANT/Myb domain
PfamPF002492.3E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-2470117IPR009057Homeodomain-like
CDDcd001675.78E-870111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDTRLKSYIE EHGTGGNWIA LPQKLGLKRC GKSCRLRWLN  60
YLRPNIKHGN FSEEEDNIIC SLYVTIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK  120
QRKLEQQAQA RKVFNQKQQI KRESEDLMLP VGVTTRTPYW PEQQYSWPIP VANNASIQYS  180
NLNNNNQTSS FSKHFPNNIV TATTMNSQHS SRDISLTQNQ LHDLHPSTLM NMISTDTCHT  240
SNVFQGFVNF SSDFPCVNQQ QIDGTMRVFY GLETMDMATN GSTNTTSTES TSWGDINSLV  300
YSPLLVSDHE ACQQRIIMPQ DVTFEESSCF AMQRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24141177108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269|PubMed:16461581}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16461581}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G109200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525879.10.0transcription factor RAX3
SwissprotQ9M2Y93e-84RAX3_ARATH; Transcription factor RAX3
TrEMBLI1K2H10.0I1K2H1_SOYBN; Uncharacterized protein
STRINGGLYMA05G23080.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-75myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]