PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.05G106000.9.p

Common Name

GLYMA_05G106000, LOC100779583

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB_related

Protein Properties

Length: 296aa MW: 32171.2 Da PI: 10.2435

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.05G106000.9.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34	7e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI R+ ++k++w++ Glyma.05G106000.9.p 5 KQKWTAEEEAALKAGVLKHGAGKWRTILTDPEfsailRMRSNVDLKDKWRN 55 79*********************************9*********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.45	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	9.72E-15	2	67	IPR009057	Homeodomain-like
SMART	SM00717	8.6E-5	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-12	4	56	IPR009057	Homeodomain-like
Pfam	PF00249	3.4E-7	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	9.19E-17	6	57	No hit	No description
SMART	SM00526	3.4E-11	104	182	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	23.174	118	187	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	2.01E-16	124	196	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.9E-14	124	190	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	1.1E-9	127	180	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MGAPKQKWTA EEEAALKAGV LKHGAGKWRT ILTDPEFSAI LRMRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKRNLPAPK IDNNHMALST IVRNDEVLDT KPIAVSGGPL QSPNLKEQIS 120 RLVDNHILEA IVNMKEQKGS DKVAIASFIE EKYRSPPNLS KLLSTKLKHM VASGKIVKEK 180 HKYRIAPSST VSEKRRCSSL VLLEEKPKDP SEVHKNDDVN ILSKSQIDAE ISKVKGLTAQ 240 EAAAAAAKAV AEAEAAIAQA EAAAREAEAA EAEAEAAQVF AKAAMKALKC KMLHI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.22770	0.0	somatic embryo\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:15060584}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.05G106000.9.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-122	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003524694.1	0.0	telomere repeat-binding factor 2
Swissprot	Q9FJW5	1e-76	TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBL	K7KPH5	0.0	K7KPH5_SOYBN; Uncharacterized protein
STRING	GLYMA05G22500.3	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	5e-72	telomere repeat binding factor 1

Link Out ? help Back to Top
Phytozome	Glyma.05G106000.9.p
Entrez Gene	100779583

Publications ? help Back to Top
Lee WK,Cho MH Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana. Nucleic Acids Res., 2016. 44(10): p. 4610-24 [PMID:26857545] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]