PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G098200.1.p
Common NameGLYMA_05G098200, LOC100806145
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 296aa    MW: 32062.6 Da    PI: 8.9987
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G098200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding636.1e-201358147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEde l ++v+++G+++W++I+r ++ gR++k+c++rw + 
  Glyma.05G098200.1.p 13 KGPWSPEEDEALQKLVERHGPRNWSLISRSIP-GRSGKSCRLRWCNQ 58
                         79******************************.***********985 PP
2Myb_DNA-binding55.81.1e-1767109347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++T+eEde +++a++++G++ W+tIar +  gRt++ +k++w++ 
  Glyma.05G098200.1.p  67 AFTPEEDETIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 109
                          79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.528863IPR017930Myb domain
SuperFamilySSF466892.92E-3210106IPR009057Homeodomain-like
SMARTSM007171.9E-171261IPR001005SANT/Myb domain
PfamPF002495.5E-191358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-261466IPR009057Homeodomain-like
CDDcd001678.34E-171557No hitNo description
SMARTSM007171.2E-1464112IPR001005SANT/Myb domain
PROSITE profilePS5129421.22965114IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2367113IPR009057Homeodomain-like
PfamPF002496.3E-1567109IPR001005SANT/Myb domain
CDDcd001673.49E-1267110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MIAVARKDMD RIKGPWSPEE DEALQKLVER HGPRNWSLIS RSIPGRSGKS CRLRWCNQLS  60
PQVEHRAFTP EEDETIIRAH ARFGNKWATI ARLLSGRTDN AIKNHWNSTL KRKCASFMMA  120
GDEAVAVSPR PLKRSFSAGA AVPPPGSPSG SDFSESSAPG VVSVSPSHVF RPVPVRPIVE  180
TASSQDDADD AGPATSLSLS LPGVESAEIS NRATTVPVMP VNTVAAPAPV PAEVGLGALN  240
LSGEFMAVMH EMIRKEVRSY MEQQKNGMMC FQGMEMMEGF RNVSVKRIGI SRVDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-41121133104MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-401211357158MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-401211357158MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-41121133104C-Myb DNA-Binding Domain
1msf_C5e-41121133104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.590190.0cotyledon| root| seed coat| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G098200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524661.10.0transcription factor MYB44
RefseqXP_028232134.10.0transcription factor MYB44-like
SwissprotO231604e-92MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A0R0K3K90.0A0A0R0K3K9_SOYBN; Uncharacterized protein
TrEMBLA0A445KM550.0A0A445KM55_GLYSO; Transcription factor MYB73
STRINGGLYMA05G21220.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-76myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]