PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G092800.1.p | ||||||||
Common Name | GLYMA_05G092800, LOC100789373 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 151aa MW: 16479.4 Da PI: 9.0091 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.7e-18 | 22 | 72 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Glyma.05G092800.1.p 22 TRYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 72 68******99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.24E-25 | 22 | 82 | No hit | No description |
Pfam | PF00847 | 1.7E-11 | 22 | 72 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.313 | 23 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-21 | 23 | 81 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.8E-38 | 23 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-30 | 23 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-11 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-11 | 62 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MEGEGGSATR KRGKDGETET TTRYKGIRMR KWGKWVAEIR EPNKRSRIWL GSYSTPVAAA 60 RAYDTAVFYL RGPSARLNFP ELLAAEGPAA SDAVMSAASI RKKATEVGAR VDALHRQDPH 120 APPAGEFADR VDLNKIPEPE NSDCDYWGGD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-14 | 24 | 80 | 6 | 63 | ATERF1 |
3gcc_A | 2e-14 | 24 | 80 | 6 | 63 | ATERF1 |
5wx9_A | 3e-14 | 23 | 81 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G092800.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003525804.1 | 1e-107 | ethylene-responsive transcription factor ERF010 | ||||
Refseq | XP_028182287.1 | 1e-107 | ethylene-responsive transcription factor ERF010-like | ||||
Swissprot | Q9FH94 | 1e-50 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
Swissprot | Q9SNE1 | 9e-51 | ERF11_ARATH; Ethylene-responsive transcription factor ERF011 | ||||
TrEMBL | A0A445ILC7 | 1e-105 | A0A445ILC7_GLYSO; Ethylene-responsive transcription factor ERF011 | ||||
TrEMBL | I1K242 | 1e-105 | I1K242_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G19050.1 | 1e-106 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 4e-53 | cooperatively regulated by ethylene and jasmonate 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G092800.1.p |
Entrez Gene | 100789373 |
Publications ? help Back to Top | |||
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