PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G072600.1.p | ||||||||
Common Name | GLYMA_05G072600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 274aa MW: 31310.1 Da PI: 5.9866 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.5 | 8.4e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +lv+ + G ++W+t+++ g+ R++k+c++rw +yl Glyma.05G072600.1.p 14 RGPWTIEEDRKLVNFIINNGIHCWRTVPKLAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50 | 6.9e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T+ E++++ +++ lG++ W++Ia++++ gRt++++k++w++ Glyma.05G072600.1.p 67 RGGFTEMEEDQIMQLHSCLGNR-WSKIASHFP-GRTDNEIKNHWNT 110 788*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.342 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.06E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-9 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.23E-6 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.466 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.19E-9 | 70 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MGRQPCCDKV GLKRGPWTIE EDRKLVNFII NNGIHCWRTV PKLAGLLRCG KSCRLRWINY 60 LRPDLKRGGF TEMEEDQIMQ LHSCLGNRWS KIASHFPGRT DNEIKNHWNT KIKKRLKLLG 120 LDPLTLKPAE QKEKSGDDIK NIELQPNTSK GSEQGVENKS LDMHGTREVA KTEGKIEENE 180 VTWDDTTGIF NNYEMLCSQL DLGSWVSQET KSSTSSYCSS SFSLDDSSNH SVGESSYLQE 240 NSLQQWVDDL DSILSWDNFN SLEKDFLFLD NRQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.39055 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G072600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-141 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014631010.1 | 0.0 | myb-related protein 315 | ||||
Refseq | XP_028231894.1 | 0.0 | myb-related protein 315-like | ||||
TrEMBL | A0A0B2SV49 | 0.0 | A0A0B2SV49_GLYSO; Myb-related protein 315 | ||||
TrEMBL | A0A445KKP1 | 0.0 | A0A445KKP1_GLYSO; Myb-related protein 315 | ||||
TrEMBL | I1K134 | 0.0 | I1K134_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G06410.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6625 | 31 | 50 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 1e-73 | myb domain protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G072600.1.p |