PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G063500.1.p | ||||||||
Common Name | GLYMA_05G063500, LOC100800453 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 279aa MW: 31243.6 Da PI: 6.9709 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.8 | 8.6e-21 | 129 | 179 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+++g r++lg+f+ta eAaka+++a+ +l+g Glyma.05G063500.1.p 129 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFDTAIEAAKAYDRAAFRLRG 179 8********.**********96655..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-32 | 128 | 188 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.90E-32 | 128 | 187 | No hit | No description |
SMART | SM00380 | 2.4E-38 | 129 | 193 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-14 | 129 | 179 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.223 | 129 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-22 | 129 | 189 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-13 | 130 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-13 | 169 | 189 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MANAAEVSAL KRIKLHLLGE LSPLATPQNK FDQTNPSPSE SSNSESSSIS LNHYFTDLLE 60 PEIEFPLFEF DSKPQVIDLE TPKTLISAEK KPQFNRKPSL LIAVPKKTEW IQFGNPEVAA 120 PENQPEKKHY RGVRQRPWGK FAAEIRDPNK RGSRVWLGTF DTAIEAAKAY DRAAFRLRGS 180 KAILNFPLEV NTAAETVSVA AVDVERKRRR EEEEVVVEDV KAVVKKEKIT EHDVSCFRGM 240 PLTPSMWTGF WDSDVKDIFN IPPLSPLSPF GFSPLVAV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-33 | 128 | 193 | 4 | 69 | ATERF1 |
3gcc_A | 8e-33 | 128 | 193 | 4 | 69 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 209 | RKRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.5293 | 0.0 | cotyledon| flower| hypocotyl| leaf| meristem| pod| root| somatic embryo| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G063500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031253 | 0.0 | KT031253.1 Glycine max clone HN_CCL_99 AP2-EREBP transcription factor (Glyma05g05130.1_like1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003524068.1 | 0.0 | ethylene-responsive transcription factor 5 | ||||
Refseq | XP_028231815.1 | 0.0 | ethylene-responsive transcription factor 5-like | ||||
Swissprot | O80341 | 3e-64 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A0R4J386 | 0.0 | A0A0R4J386_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445KKG8 | 0.0 | A0A445KKG8_GLYSO; Ethylene-responsive transcription factor 5 | ||||
STRING | GLYMA05G05130.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 3e-54 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G063500.1.p |
Entrez Gene | 100800453 |
Publications ? help Back to Top | |||
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