PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G062700.2.p | ||||||||
Common Name | GLYMA_05G062700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 297aa MW: 33117.1 Da PI: 8.0518 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.3e-19 | 135 | 189 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k Glyma.05G062700.2.p 135 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 189 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 129.7 | 1.1e-41 | 135 | 224 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr + Glyma.05G062700.2.p 135 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELR-A 223 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l Glyma.05G062700.2.p 224 L 224 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 5.2E-35 | 2 | 109 | IPR006712 | HD-ZIP protein, N-terminal |
SuperFamily | SSF46689 | 1.13E-18 | 124 | 192 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.427 | 131 | 191 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-16 | 133 | 195 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-16 | 135 | 189 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.99E-16 | 135 | 192 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-18 | 140 | 189 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.0E-5 | 162 | 171 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 166 | 189 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.0E-5 | 171 | 187 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.6E-12 | 191 | 225 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 4.6E-26 | 191 | 234 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MMVQKEDLGL SLSLNFPHHS TPNPQHLSLM SSSTHSSSPS GFNPQKPSWN EAFASSDRNS 60 DTCRGETRSF LRGIDVNRLP SAVDAEEEAG VSSPNSTVSC VSGKRSEREP NGEEHDMDRA 120 CSRGISDEED AETSRKKLRL SKDQSAILEE SFKEHNTLNP KQKLALAKQL GLRPRQVEVW 180 FQNRRARTKL KQTEVDCEVL KRCCENLTEE NRRLQKEVQE LRALKLSPQF YMQMSPPTTL 240 TMCPSCERVA VSSSAVGSAT RHHPMAHAHA HARPMPNGPW ASAAPIPHRP FDAFHQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 139 | SRKKLRL |
2 | 183 | 191 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.61685 | 0.0 | cotyledon| leaf| somatic embryo| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and stems. {ECO:0000269|PubMed:8106086}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269|PubMed:10477292, ECO:0000269|PubMed:11260495, ECO:0000269|PubMed:8449400}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G062700.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269|PubMed:8106086}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001348121.1 | 0.0 | homeobox-leucine zipper protein | ||||
Swissprot | Q05466 | 1e-110 | HAT4_ARATH; Homeobox-leucine zipper protein HAT4 | ||||
TrEMBL | I1K0T2 | 0.0 | I1K0T2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G04990.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 1e-97 | homeobox protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G062700.2.p |