PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G061900.1.p | ||||||||
Common Name | LOC100799575 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 202aa MW: 23299.1 Da PI: 6.928 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.6 | 4e-20 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+++++ +G+++Wkt+a + g++R++k+c++rw++yl Glyma.05G061900.1.p 18 RGAWTPEEDRKLAQCIEIHGPKRWKTVAIKSGLNRCGKSCRLRWLNYL 65 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 71 | 116 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eE++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Glyma.05G061900.1.p 71 RGNISDEEEDLILRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 116 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.428 | 13 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.91E-29 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-16 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-18 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-24 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.53E-11 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 20.161 | 70 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-14 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-15 | 71 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-25 | 73 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-10 | 75 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0048629 | Biological Process | trichome patterning | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MAPRVNDGTI TSKRAMNRGA WTPEEDRKLA QCIEIHGPKR WKTVAIKSGL NRCGKSCRLR 60 WLNYLRPNIK RGNISDEEED LILRLHRLLG NRWSLIAGRL PGRTDNEIKN YWNSHLCKKV 120 NQKVEKPESS TRHEIIGQND QNAGDNRAMS ENEVEINESG NLDVSLDVNE FFNFSEESFG 180 FDWLNKYLEL DQIPESTERS E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-29 | 16 | 120 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G061900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 3e-88 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003525887.1 | 1e-147 | transcription factor MYB114 | ||||
Refseq | XP_028231799.1 | 1e-147 | transcription factor MYB114-like | ||||
Swissprot | P10290 | 7e-50 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A368UI80 | 1e-146 | A0A368UI80_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445KJV3 | 1e-146 | A0A445KJV3_GLYSO; Anthocyanin regulatory C1 protein | ||||
STRING | GLYMA05G04900.1 | 1e-147 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2148 | 32 | 88 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 4e-51 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G061900.1.p |
Entrez Gene | 100799575 |