PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G056000.2.p
Common NameGLYMA_05G056000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family YABBY
Protein Properties Length: 175aa    MW: 19329.2 Da    PI: 8.0779
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G056000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY198.72.4e-61111682160
                YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 
                          d+   seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++      +++ hl++s+  + ++ l+   +      +++++
  Glyma.05G056000.2.p  11 DHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLMPSPTQFHLGHSFFSPSHNLLEEIPNPSPNFLMNQTN 100
                          577899***********************************************************9988666665555555555555555 PP

                YABBY  92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                           s+s++ ++  +   +e+pr p ++rPPekrqrvPsaynrfik+eiqrik+ nPdi+hreafsaaakn 
  Glyma.05G056000.2.p 101 LSASNEFSMPARIAADELPR-PIMNRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNV 168
                          55555554445667778887.668********************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.1E-6015167IPR006780YABBY protein
SuperFamilySSF470956.84E-6121166IPR009071High mobility group box domain
CDDcd000849.42E-4132159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MSSSSTTLSL DHLPPSEQLC YVHCNICDTV LAVSVPCTSL FKTVTVRCGH CTNLLPVNMR  60
GLLMPSPTQF HLGHSFFSPS HNLLEEIPNP SPNFLMNQTN LSASNEFSMP ARIAADELPR  120
PIMNRPPEKR QRVPSAYNRF IKDEIQRIKS VNPDITHREA FSAAAKNVSI LSPC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.519090.0cotyledon| flower| hypocotyl| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf primordia, young leaves, floret meristems, floral organ primordia, stamens and carpels. Does not show polar expression pattern. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17351053}.
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G056000.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001344728.11e-120protein YABBY 7 isoform 1
RefseqXP_028231726.11e-120protein YABBY 4-like isoform X1
SwissprotQ01JG21e-58YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-58YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A0R0K0D71e-124A0A0R0K0D7_SOYBN; Uncharacterized protein
STRINGGLYMA05G04260.11e-119(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.16e-55YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]