PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G050600.1.p
Common NameGLYMA_05G050600, LOC100803130
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 294aa    MW: 33241.4 Da    PI: 6.8334
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G050600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.7e-082382712154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp+++++++L +++gL+ +q+ +WF N+R +
  Glyma.05G050600.1.p 238 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 271
                          469*****************************87 PP
2ELK25.53e-09192213122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK +L++++++++ ++++E++
  Glyma.05G050600.1.p 192 ELKIELKQGFKSRIEDVREEIL 213
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.9E-182670IPR005540KNOX1
PfamPF037906.1E-172869IPR005540KNOX1
SMARTSM012563.2E-2581136IPR005541KNOX2
PfamPF037911.6E-1884135IPR005541KNOX2
PROSITE profilePS512139.132192212IPR005539ELK domain
PROSITE profilePS5007111.645212275IPR001356Homeobox domain
SMARTSM003893.4E-11214279IPR001356Homeobox domain
SuperFamilySSF466893.29E-16214279IPR009057Homeodomain-like
CDDcd000864.18E-12215276No hitNo description
Gene3DG3DSA:1.10.10.601.5E-25219277IPR009057Homeodomain-like
PfamPF059201.0E-17232271IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MQEAGLGMGM VSGEVSAAGD HHHHHRQVKA EIATHPLYEQ LLSAHVSCLR VATPIDQLPL  60
IDGQLSQSHH LLRSYASHHS HSLSPHDRQE LDNFMAQYLI VLCTFKEQLQ QHVRVHAVEA  120
VMACRDIEST LQALTGVSLG EGTGATMSDD EDDLQMDGSL DQSSAEGHDL MGFGPLLPTE  180
SERSLMERVR QELKIELKQG FKSRIEDVRE EILRKRRAGK LPGDTTSVLK AWWQQHAKWP  240
YPTEDDKAKL VEETGLQLKQ INNWFINQRK RNWHSNSQSV TSLKSKRKRE YAH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A6e-13215271864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268288RKRNWHSNSQSVTSLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.556080.0hypocotyl| leaf| root| seed coat| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In roots, stems and cotyledons of one-week old seedlings. In mature plants, in young leaves from first level below flowers as well as in flower buds and open flowers.
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
UniProtPossible developmental regulator.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G050600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding; up to 7-fold increase.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0939000.0BT093900.1 Soybean clone JCVI-FLGm-17N4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525739.10.0homeobox protein HD1
RefseqXP_028231658.10.0homeobox protein HD1-like
SwissprotP466061e-163HD1_BRANA; Homeobox protein HD1
SwissprotQ9FPQ81e-163KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A445KJB20.0A0A445KJB2_GLYSO; Homeobox protein knotted-1-like 7 isoform A
TrEMBLI1K0E50.0I1K0E5_SOYBN; Uncharacterized protein
STRINGGLYMA05G03650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63483450
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-166KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]
  5. Boivin R,Hamel F,Beauseigle D,Bellemare G
    Stage-specific transcription of the homebox gene Bnhd1 in young tissues and flowers of Brassica napus.
    Biochim. Biophys. Acta, 1994. 1219(1): p. 201-4
    [PMID:7916213]