PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G050400.1.p | ||||||||
Common Name | GLYMA_05G050400, LOC100797827 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 347aa MW: 36459.9 Da PI: 7.5624 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.6 | 3.8e-37 | 70 | 174 | 3 | 105 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasns 85 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a+pai+e+tgt++ +a ++ ss+s Glyma.05G050400.1.p 70 PKRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEPAIIEATGTGTVPAIAVsvggalkI--PTTSSNS-- 155 799************************************************************9999955554333221..1111111.. PP TCP 86 ssgkaaksaakskksqksaa 105 +++aa++aa+s+k++k+++ Glyma.05G050400.1.p 156 -NEEAAAAAASSNKKRKRPS 174 .1122222222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.0E-30 | 74 | 170 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.792 | 75 | 129 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MDQDDDEAGT TNLSTSDADV AEKETTNNLN GVPKQNNAFE ETTGFQVLPL KKEEPTYSDP 60 DTEIVPVKLP KRSSTKDRHT KVEGRGRRIR IPATCAARIF QLTRELGHKS DGETVRWLLE 120 HAEPAIIEAT GTGTVPAIAV SVGGALKIPT TSSNSNEEAA AAAASSNKKR KRPSNSEFVD 180 INININDAVS KSSGLAPVHV PQGLVPVWAV SNPSMVIPAN TFWMIPQAAT TPNPSGGVAG 240 PASQQPQLWA LSPSVFNVAA RPISPLVTTN IPEARPVMTA CSNGSNSAVS TSTVGAKLAT 300 KSSMAPSVSS SGTKSGKTQM LRDFSLEICD KQELQLLGRS GTHAQS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.14107 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G050400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003525544.1 | 0.0 | transcription factor TCP9 | ||||
Swissprot | O64647 | 1e-69 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | I1K0E3 | 0.0 | I1K0E3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G03610.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 | Representative plant | OGRP3178 | 11 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 2e-60 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G050400.1.p |
Entrez Gene | 100797827 |