PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G049900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 28294.5 Da PI: 4.9157 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.2e-18 | 62 | 113 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +++Wv+e+r+p + k++r++lg++ +e+Aa+a++ a+++l+g Glyma.05G049900.1.p 62 PVYRGVRRRN-NNKWVCEVRVP---NdKSTRIWLGTYPVPEMAARAHDVAALALRG 113 68*****887.8*********9...6678*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.1E-13 | 62 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-20 | 63 | 123 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.496 | 63 | 121 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-23 | 63 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-29 | 63 | 123 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.53E-26 | 64 | 123 | No hit | No description |
PRINTS | PR00367 | 1.3E-6 | 64 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-6 | 87 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MNILGQSFNE SNNGSYSCSS PETGSSSNIP NTFHSDEEVH TLASARPKKR AGRRIFKETR 60 HPVYRGVRRR NNNKWVCEVR VPNDKSTRIW LGTYPVPEMA ARAHDVAALA LRGKSACLNF 120 ADSAWRLPLP ASTNAKEIRR VAAAAAVAIA AEDSCGEQLQ NSIVNDAVAD DCEVSRSDVS 180 FDEDSNSNKG LRVFCDLDEI TMADAPVFED MREWLQSMAD EPLRSPTFVT YVNVRDVWNF 240 VEDDAEVSLW SFTI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G049900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003525540.1 | 0.0 | dehydration-responsive element-binding protein 1F | ||||
Refseq | XP_028231653.1 | 0.0 | dehydration-responsive element-binding protein 1F-like | ||||
Swissprot | Q9LN86 | 4e-52 | DRE1F_ARATH; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A445KJB0 | 0.0 | A0A445KJB0_GLYSO; Dehydration-responsive element-binding protein 1F | ||||
STRING | GLYMA05G03560.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63030.2 | 9e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G049900.1.p |
Publications ? help Back to Top | |||
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