PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G045300.1.p
Common NameGLYMA_05G045300, LOC100815959
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 512aa    MW: 57670.1 Da    PI: 6.4529
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G045300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.82e-1101385101374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfse 86 
                          lv+lL++cAeav+ +d++ a+ lL++l+ +a   g+++qR+a++f+++L +rl+   + +  a p+ ++  +     s+e   a++l +e
  Glyma.05G045300.1.p 138 LVQLLIACAEAVACRDKSHASILLSELKANALVFGSSFQRVASCFVQGLIERLNL-IQPIGPAGPMMPSMMNImdvaSDEMEEAFRLVYE 226
                          689**************************************************98.5555555544444322244778899999****** PP

                 GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfAe 170
                          ++P ++f+h +aN++Ilea+ege+ vH++D+++s    +G QW  L+q La R +g    +lRiTgvg       e+l+++ge L+ +A+
  Glyma.05G045300.1.p 227 LCPHIQFGHYLANSTILEAFEGESFVHVVDLGMSlglrHGHQWRGLIQNLAGRVGGERvrRLRITGVGL-----CERLQTIGEELSVYAN 311
                          ******************************98753333788*************7654459********.....89************** PP

                 GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                          +lgv++ef+v v+k+le+l++e+++v+++E+l+Vn++lqlh +++es    +   +vL+++ +l Pkv+v+veq+++hn++ Fl rf+e+
  Glyma.05G045300.1.p 312 NLGVNLEFSV-VEKNLENLKPEDIKVREEEVLVVNSILQLHCVVKESRGALN---SVLQMIHGLGPKVLVMVEQDSSHNGPFFLGRFMES 397
                          *********9.8********************************88877777...8********************************** PP

                 GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349
                          l+yys++fdsl++ lp+ + +r+k+E++++++ei+n+v+ceg  r erhe++ +Wr+r+++aGF+++p++   ++qak  l k k  +gy
  Glyma.05G045300.1.p 398 LHYYSSIFDSLDVMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPLRMERHERVDQWRRRMSRAGFQAAPIKM--VAQAKQWLLKNKvCEGY 485
                          *********************************************************************75..55666666666668*** PP

                 GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
                          +v ee+g+lvlgWk+rp+v+vS+W+
  Glyma.05G045300.1.p 486 TVVEEKGCLVLGWKSRPIVAVSCWK 510
                          ************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.66112491IPR005202Transcription factor GRAS
PfamPF035146.8E-108138510IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MAPPPYSAYN GEIDGENLPL AFDIWENLWA YGYYPHQPIS EINSTSTLVD FPFCDGTIVR  60
DNKRVKRTVC FPIYNSINCH SFFNTNNSSS RNSIPKLHFR DHIRTYTQRY LAAEPVEDTN  120
SSESSGGEED GCADGVRLVQ LLIACAEAVA CRDKSHASIL LSELKANALV FGSSFQRVAS  180
CFVQGLIERL NLIQPIGPAG PMMPSMMNIM DVASDEMEEA FRLVYELCPH IQFGHYLANS  240
TILEAFEGES FVHVVDLGMS LGLRHGHQWR GLIQNLAGRV GGERVRRLRI TGVGLCERLQ  300
TIGEELSVYA NNLGVNLEFS VVEKNLENLK PEDIKVREEE VLVVNSILQL HCVVKESRGA  360
LNSVLQMIHG LGPKVLVMVE QDSSHNGPFF LGRFMESLHY YSSIFDSLDV MLPKYDTKRA  420
KMEQFYFAEE IKNIVSCEGP LRMERHERVD QWRRRMSRAG FQAAPIKMVA QAKQWLLKNK  480
VCEGYTVVEE KGCLVLGWKS RPIVAVSCWK C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-5914550925377Protein SCARECROW
5b3h_D5e-5914550925377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G045300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525665.10.0scarecrow-like protein 21
RefseqXP_028231600.10.0scarecrow-like protein 21
TrEMBLA0A445KJ450.0A0A445KJ45_GLYSO; DELLA protein GAI1
TrEMBLI1K0820.0I1K082_SOYBN; Uncharacterized protein
STRINGGLYMA05G03020.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Representative plantOGRP70521119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-73RGA-like 1