PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G038500.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 457aa    MW: 52200.6 Da    PI: 6.8472
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G038500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.9e-18176222148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT +Ed ll+++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
  Glyma.05G038500.1.p 176 KGQWTSDEDRLLIQLVEQFGVRKWSHIAQALP-GRIGKQCRERWHNHL 222
                          799*****************************.*************97 PP
2Myb_DNA-binding59.66.7e-19228270145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          ++ WT+eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+
  Glyma.05G038500.1.p 228 KDTWTEEEDKILIQAHAEIGNK-WAEIAKKLP-GRTENSIKNHWN 270
                          679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.067171226IPR017930Myb domain
SuperFamilySSF466893.28E-32173269IPR009057Homeodomain-like
SMARTSM007171.0E-16175224IPR001005SANT/Myb domain
PfamPF002491.2E-16176222IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-29177230IPR009057Homeodomain-like
CDDcd001672.00E-15179222No hitNo description
PROSITE profilePS5129422.672227277IPR017930Myb domain
SMARTSM007175.6E-18227275IPR001005SANT/Myb domain
PfamPF002491.8E-17228270IPR001005SANT/Myb domain
CDDcd001672.98E-14230273No hitNo description
Gene3DG3DSA:1.10.10.607.4E-23231275IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDLHENYLKP SMEDQLPFGT PSTQGFLQDF HHIDHQFHVN GSSSSNPIFG VQTPNFDPFD  60
QNVTCESAPP DFEAYECKPL AESNGIGHAH LMNNFQYAGY SLNLPRTNQL DLMVANQSYM  120
TFNALETKPL NFVVPDEVSC ISPPNYYKRV GLNKNLRESP STRRTFKARK KSNIVKGQWT  180
SDEDRLLIQL VEQFGVRKWS HIAQALPGRI GKQCRERWHN HLRPDIKKDT WTEEEDKILI  240
QAHAEIGNKW AEIAKKLPGR TENSIKNHWN ATKRRQYSKR KCRSKYPRGS LLQEYIKSLN  300
LDKNPPIDYR KKSAKNANAN TNSNGKAAAQ PQCSDQFCLN SQMVPRYDFN EVPDFCLDDN  360
LFEEGCSIDS LLDDMQSAST MDEKGFDEKI MQCAPTMEGK QSHQGGMQCV HVVDVDVHHE  420
TEMMAHTNGI EVKKELDFVE MMSHMNGNHY SIHSPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-461742762104C-Myb DNA-Binding Domain
1msf_C5e-461742762104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cellularized but not uncellularized female gametophytes. {ECO:0000269|PubMed:16214903}.
UniprotTISSUE SPECIFICITY: Expressed at high levels in the synergid cells of the female gametophyte, and at lower levels in the endosperm of young seeds and the trichomes of young leaves and sepals. {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G038500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0283310.0EU028331.1 Glycine max clone BAC gmw1-89M01 genomic sequence.
GenBankEU0283320.0EU028332.1 Glycine max clone BAC gmw2-77P21 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525506.10.0transcription factor MYB98
RefseqXP_028234133.10.0transcription factor MYB98-like
SwissprotQ9S7L21e-93MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A445KIU10.0A0A445KIU1_GLYSO; Transcription factor MYB98
STRINGGLYMA05G02300.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-93myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]