PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G032200.1.p
Common NameGlyma05g01640.1, GLYMA_05G032200, MYB176
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 286aa    MW: 31007.6 Da    PI: 9.6699
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G032200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.5e-1480124347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE++l++ + ++ G+g+W+ I++   k+Rt+ q+ s+ qky
  Glyma.05G032200.1.p  80 PWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKY 124
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.26273129IPR017930Myb domain
SuperFamilySSF466892.92E-1775130IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-1776127IPR006447Myb domain, plants
SMARTSM007173.9E-1077127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-1179124IPR009057Homeodomain-like
CDDcd001677.34E-1080125No hitNo description
PfamPF002495.6E-1280124IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006338Biological Processchromatin remodeling
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0035066Biological Processpositive regulation of histone acetylation
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0004402Molecular Functionhistone acetyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MSRASSAASG EIMLFGVRVV VDSMRKSVSM NNLSQYEHPL DATTTNNNKD AVAAGYASAD  60
DAAPQNSGRH RERERKRGVP WTEEEHKLFL VGLQKVGKGD WRGISKNYVK TRTPTQVASH  120
AQKYFLRRSN LNRRRRRSSL FDITTDTVSA IPMEEEQVQN QDTLCHSQQQ PVFPAETSKI  180
NGFPAMPVYQ FGVGSSGVIS VQGTGNPMEE LTLGQGNVEK HNVPNKASTV SGIITPGSSS  240
SAIDPPPTLS LGLSFSSDQR QTSSRHSALH AMQCFSNGDS IISVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.5930.0cotyledon| flower| hypocotyl| leaf| meristem| pod| root| seed coat| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00631PBMTransfer from PK23829.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G032200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5502090.0FJ550209.1 Glycine max cultivar Harosoy63 isoflavonoid regulator (MYB176) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236048.20.0transcription factor MYB176
RefseqXP_028231455.10.0transcription factor MYB1R1-like
SwissprotQ2V9B03e-67MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A445KIN10.0A0A445KIN1_GLYSO; Transcription factor MYB1R1
TrEMBLD8L1Z50.0D8L1Z5_SOYBN; Isoflavonoid regulator
STRINGGLYMA05G01640.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42483154
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.22e-49MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]