PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G030000.1.p
Common NameGLYMA_05G030000, LOC100799054
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 332aa    MW: 37413.2 Da    PI: 4.5038
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G030000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-1983137357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          k+++++++q++ Le+ Fe+++++  e++++LAk lgL+ rqV +WFqNrRa++k+
  Glyma.05G030000.1.p  83 KKRRLSASQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKN 137
                          56689************************************************95 PP
2HD-ZIP_I/II126.98.8e-4182174193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrls+ qv++LE+sFeee+kLeperK++la++Lglqprqva+WFqnrRAR+k+kqlEkdye+L++++++lk++ + L ke+++L++e
  Glyma.05G030000.1.p  82 EKKRRLSASQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKNKQLEKDYETLHASFESLKSNYDCLLKEKDKLKAE 171
                          69**************************************************************************************99 PP

          HD-ZIP_I/II  91 lke 93 
                          +++
  Glyma.05G030000.1.p 172 VAS 174
                          875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-1967140IPR009057Homeodomain-like
PROSITE profilePS5007117.71878138IPR001356Homeobox domain
SMARTSM003892.7E-1981142IPR001356Homeobox domain
PfamPF000468.9E-1783137IPR001356Homeobox domain
CDDcd000864.30E-1883139No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2085145IPR009057Homeodomain-like
PRINTSPR000311.3E-5109118IPR000047Helix-turn-helix motif
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5118134IPR000047Helix-turn-helix motif
PfamPF021839.8E-17138179IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAGSGSAFSN ITSFLRTQQP SSQPLDSSLF LSAPSSAPFL GSRSMMSFEG EGGKGCNGSF  60
FRAFDMDDNG DECMDEYFHQ PEKKRRLSAS QVQFLEKSFE EENKLEPERK TKLAKDLGLQ  120
PRQVAIWFQN RRARWKNKQL EKDYETLHAS FESLKSNYDC LLKEKDKLKA EVASLTEKVL  180
ARGKQEGHMK QAESESEETK GLLHLQEQEP PQRLLLQSVS EGEGSKVSSV VGGCKQEDIS  240
SARSDILDSD SPHYTDGVHS ALLEHGDSSY VFEPDQSDMS QDEEDNLSKS LYPSYLFPKL  300
EEDVDYSDPP ESSCNFGFPE EDHVLWTWAY Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARWKNKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.346090.0cotyledon| epicotyl| hypocotyl| leaf| meristem| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G030000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-125AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524980.10.0homeobox-leucine zipper protein HAT5
TrEMBLI1JZS90.0I1JZS9_SOYBN; Uncharacterized protein
STRINGGLYMA05G01390.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-46homeobox 1