PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G029000.1.p
Common NameLOC100793946
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 595aa    MW: 63792.4 Da    PI: 5.7457
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G029000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.85.3e-29236295159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+ +d +++ +tYeg+Hnh+
  Glyma.05G029000.1.p 236 MNDGCQWRKYGQKISKGNPCPRAYYRCTIApSCPVRKQVQRCVDDMSILFTTYEGTHNHT 295
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-30221297IPR003657WRKY domain
SuperFamilySSF1182902.75E-26229297IPR003657WRKY domain
PROSITE profilePS5081127.129231297IPR003657WRKY domain
SMARTSM007745.7E-34236296IPR003657WRKY domain
PfamPF031065.9E-25237294IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MELASERSGD GGNGLKEEDS AGDDDGHHKQ EIIVEEPPVT NTESSILEAP PSTSPNKKEE  60
VVNQLETAKA EMGVAREENQ LLKTCLNKIM NEYRTLEMQF QDILKQQGTK KNADKGNDDK  120
HEEILEEADL VSLCLGRVPR SDEKIKVSNK PLKDDEGLTL GLECKFETSK SGSTNEALPN  180
NPSPENSCEV VPKEEGGESK EALKTMRSDT EDEVAQQNPT KKPRVCVRAR CDTPTMNDGC  240
QWRKYGQKIS KGNPCPRAYY RCTIAPSCPV RKQVQRCVDD MSILFTTYEG THNHTLPPSA  300
TAMASTTSAA ASMLLSGSST SNSASIPSTA TTNLQGLNFY LSDGSKPRQL YLSNPALSSS  360
LSHPTITLDL TTSHPSASSS SSSPFVRFNS NYNNNHQPRY PSSSSSLSFS TSNSSEIANA  420
ISWSNGFLNN NRNILSSVNF GRQQMENMNQ SYMQKNNNNT SLLPQADTIS AATKVITADP  480
AFQSALAAAL TSFIGGGGVG NTRGSQGGNV VGESLSLGQK MKWGEVFPAS NNSNSSISNN  540
KVNGCASSFL NKTPAANTQT KNLMFLPPSS LPFSSTPKSA SASPAADNSD TTTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21224298275WRKY transcription factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269|PubMed:24884371}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G029000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579541.10.0probable WRKY transcription factor 72
RefseqXP_014630917.10.0probable WRKY transcription factor 72
SwissprotA0A3Q7GFB51e-120WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLA0A368UI340.0A0A368UI34_SOYBN; Uncharacterized protein
STRINGGLYMA05G01285.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-68WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]