PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.05G025700.2.p

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

M-type_MADS

Protein Properties

Length: 337aa MW: 38170.2 Da PI: 6.7182

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.05G025700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.8	2.4e-22	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e+ snr+vt+skR+ gi+KKA+ELS+LCd++v +++fs+tgk Glyma.05G025700.2.p 10 KLESISNRHVTYSKRKSGIIKKAKELSILCDIDVVLLMFSPTGK 53 57899*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.025	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.2E-28	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-24	2	93	IPR002100	Transcription factor, MADS-box
CDD	cd00266	6.98E-25	2	84	No hit	No description
PRINTS	PR00404	1.1E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-19	12	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MGRVKLKIKK LESISNRHVT YSKRKSGIIK KAKELSILCD IDVVLLMFSP TGKPTLLQGE 60 RSNIEEIIAK FAQLSPQERA KRKMESLEAL KKTFRKLDHD VKIQDFLGSS SQTMEELSYQ 120 VKVLQAQITE VQQRLSYWNN LEKINNLEHL RQMEDSLRES INRVGLQKEG MALPSMIASL 180 QDSQPLSWLL NDDNHHLMLP NEPKFQSFSD NTNRDVECST DISLPNYSGY IGSNKFEVGS 240 SPQVTTLGQG GGAMNELNGT TFLNVQCCDQ FAYPPPPDIE EVKQFPTMDN KSNTVDYQVH 300 NNFDLPRSLF ENGHQFWNSA SGSCGIAMFN ENNYHK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-13	1	92	1	90	MEF2 CHIMERA
6byy_B	1e-13	1	92	1	90	MEF2 CHIMERA
6byy_C	1e-13	1	92	1	90	MEF2 CHIMERA
6byy_D	1e-13	1	92	1	90	MEF2 CHIMERA
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.05G025700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235246	1e-149	AC235246.1 Glycine max strain Williams 82 clone GM_WBb0033G13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028209318.1	0.0	agamous-like MADS-box protein AGL65 isoform X3
Swissprot	Q7X9I0	3e-82	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A0R0JZ73	0.0	A0A0R0JZ73_SOYBN; Uncharacterized protein
STRING	GLYMA17G10941.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-84	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	Glyma.05G025700.2.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]