PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G025700.1.p
Common NameGLYMA_05G025700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 339aa    MW: 38411.5 Da    PI: 6.7182
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G025700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.82.4e-221053245
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         + e+ snr+vt+skR+ gi+KKA+ELS+LCd++v +++fs+tgk
  Glyma.05G025700.1.p 10 KLESISNRHVTYSKRKSGIIKKAKELSILCDIDVVLLMFSPTGK 53
                         57899*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.025153IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-28160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-24293IPR002100Transcription factor, MADS-box
CDDcd002665.81E-25284No hitNo description
PRINTSPR004041.2E-16323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-191254IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGRVKLKIKK LESISNRHVT YSKRKSGIIK KAKELSILCD IDVVLLMFSP TGKPTLLQGE  60
RSNIEEIIAK FAQLSPQERA KRKMESLEAL KKTFRKLDHD VKIQDFLGSS SQTMEELSYQ  120
VKVLQAQITE VQQRLSYWNN LEKINNLEHL RQMEDSLRES INRVGLQKLQ EGMALPSMIA  180
SLQDSQPLSW LLNDDNHHLM LPNEPKFQSF SDNTNRDVEC STDISLPNYS GYIGSNKFEV  240
GSSPQVTTLG QGGGAMNELN GTTFLNVQCC DQFAYPPPPD IEEVKQFPTM DNKSNTVDYQ  300
VHNNFDLPRS LFENGHQFWN SASGSCGIAM FNENNYHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-13192190MEF2 CHIMERA
6byy_B1e-13192190MEF2 CHIMERA
6byy_C1e-13192190MEF2 CHIMERA
6byy_D1e-13192190MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G025700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352461e-149AC235246.1 Glycine max strain Williams 82 clone GM_WBb0033G13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028209319.10.0agamous-like MADS-box protein AGL65 isoform X4
SwissprotQ7X9I05e-82AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A0R0JXK10.0A0A0R0JXK1_SOYBN; Uncharacterized protein
STRINGGLYMA17G10941.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Representative plantOGRP59461119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.12e-84AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]