PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G025500.1.p | ||||||||
Common Name | GLYMA_05G025500, LOC100798002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 351aa MW: 39483.5 Da PI: 7.5259 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.1 | 1.2e-55 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL kkv ++k+ + ++i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdk Glyma.05G025500.1.p 16 LPPGFRFHPTDEELISHYLYKKVIDTKFCA-RAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDK 104 79*************************988.89***************888999************************************ PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 e+++ +++lvg+kktLvfy+grapkgek++Wvmheyrle Glyma.05G025500.1.p 105 EIFR-GKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 142 ****.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-64 | 12 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.747 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-29 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MENVPAVCKE DDQMDLPPGF RFHPTDEELI SHYLYKKVID TKFCARAIGE VDLNKSEPWD 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIFRGK SLVGMKKTLV 120 FYRGRAPKGE KSNWVMHEYR LEGKFSAHNL PKTAKNEWVI CRVFQKSSAG KKTHISGIMR 180 LDSFANELGS SALPPLSDSS PSIGNTKPLN DSAYVPCFSN PIDVQRNQEG VFDSFTNSMY 240 GVSSNPMDIL PRMPPSGSFY STQGVQAAPN FAFPGSVYTL QDHTILRALC ENNGYKPERD 300 MISVSQETGL TTDINAETSS NFDVGWRPFE NHNHASVSVA PLDLDGLWNY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-54 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-54 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-54 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-54 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-54 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-54 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-54 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.62708 | 0.0 | seed coat |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G025500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU661925 | 0.0 | EU661925.1 Glycine max NAC domain protein (NAC28) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003524726.1 | 0.0 | NAC domain-containing protein 100 | ||||
Swissprot | Q9FLJ2 | 1e-154 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | K7KMI5 | 0.0 | K7KMI5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G00930.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-148 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G025500.1.p |
Entrez Gene | 100798002 |
Publications ? help Back to Top | |||
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