PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.05G025500.1.p

Common Name

GLYMA_05G025500, LOC100798002

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 351aa MW: 39483.5 Da PI: 7.5259

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.05G025500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.1	1.2e-55	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL kkv ++k+ + ++i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdk Glyma.05G025500.1.p 16 LPPGFRFHPTDEELISHYLYKKVIDTKFCA-RAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDK 104 79***********************988.89***********888999******************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 e+++ +++lvg+kktLvfy+grapkgek++Wvmheyrle Glyma.05G025500.1.p 105 EIFR-GKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 142 .999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-64	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.747	16	166	IPR003441	NAC domain
Pfam	PF02365	3.0E-29	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MENVPAVCKE DDQMDLPPGF RFHPTDEELI SHYLYKKVID TKFCARAIGE VDLNKSEPWD 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIFRGK SLVGMKKTLV 120 FYRGRAPKGE KSNWVMHEYR LEGKFSAHNL PKTAKNEWVI CRVFQKSSAG KKTHISGIMR 180 LDSFANELGS SALPPLSDSS PSIGNTKPLN DSAYVPCFSN PIDVQRNQEG VFDSFTNSMY 240 GVSSNPMDIL PRMPPSGSFY STQGVQAAPN FAFPGSVYTL QDHTILRALC ENNGYKPERD 300 MISVSQETGL TTDINAETSS NFDVGWRPFE NHNHASVSVA PLDLDGLWNY *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MENVPAVCKE DDQMDLPPGF RFHPTDEELI SHYLYKKVID TKFCARAIGE VDLNKSEPWD  60
LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIFRGK SLVGMKKTLV  120
FYRGRAPKGE KSNWVMHEYR LEGKFSAHNL PKTAKNEWVI CRVFQKSSAG KKTHISGIMR  180
LDSFANELGS SALPPLSDSS PSIGNTKPLN DSAYVPCFSN PIDVQRNQEG VFDSFTNSMY  240
GVSSNPMDIL PRMPPSGSFY STQGVQAAPN FAFPGSVYTL QDHTILRALC ENNGYKPERD  300
MISVSQETGL TTDINAETSS NFDVGWRPFE NHNHASVSVA PLDLDGLWNY *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-54	13	172	17	174	NAC domain-containing protein 19
3swm_B	2e-54	13	172	17	174	NAC domain-containing protein 19
3swm_C	2e-54	13	172	17	174	NAC domain-containing protein 19
3swm_D	2e-54	13	172	17	174	NAC domain-containing protein 19
3swp_A	2e-54	13	172	17	174	NAC domain-containing protein 19
3swp_B	2e-54	13	172	17	174	NAC domain-containing protein 19
3swp_C	2e-54	13	172	17	174	NAC domain-containing protein 19
3swp_D	2e-54	13	172	17	174	NAC domain-containing protein 19
4dul_A	3e-54	13	172	14	171	NAC domain-containing protein 19
4dul_B	3e-54	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.62708	0.0	seed coat

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.05G025500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU661925	0.0	EU661925.1 Glycine max NAC domain protein (NAC28) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003524726.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-154	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	K7KMI5	0.0	K7KMI5_SOYBN; Uncharacterized protein
STRING	GLYMA05G00930.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-148	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Glyma.05G025500.1.p
Entrez Gene	100798002

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]