PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G017800.2.p | ||||||||
Common Name | GLYMA_05G017800, LOC100800999 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 548aa MW: 60193.6 Da PI: 9.6546 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 54.8 | 1.6e-17 | 264 | 313 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq Glyma.05G017800.2.p 264 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIHFLQ 313 889*************************9....9******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 7.3E-24 | 259 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.18E-18 | 260 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.653 | 262 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-15 | 264 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.18E-15 | 264 | 317 | No hit | No description |
SMART | SM00353 | 1.5E-13 | 268 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence Send to blast |
MELPQARPLG TEGRKPTHDF LSLYSNSTAQ QDPRPPSQGS YLKTHDFLQP LERVETKASA 60 KEEATDEISS VVQKPRSPSV EHLLPGGIGT YSISHISYVN NNNNNNQRVP KPETSSLYGR 120 QATSTDRNEE NSNCSSYTSS GFTLWEESSG KRGKTGKENN AGEKPSLGES AAKLGQWTTT 180 ERTSQSFSNN RHGSFSSRSS SQTTGLKNQS FIEMMKSARD SAQNEVLESE ETFFLKKEPS 240 SNTQRELLVK VDGKSTDQKP NTPRSKHSAT EQRRRSKIND RFQMLRELIP HSDQKRDKAS 300 FLLEVIEYIH FLQEKVHKYE GSFQGWSNEP ERLMPWRNND KPAESFQPRG TDNGSSPSPT 360 IPGSTQNVES GLSTATTSKT MDHQAGKMNK AFPIPIPSQL NFFTPTQIGG PGGVVSQLTH 420 RSASDAENTK YQPSVECQTM TATNEKLKEK ELTIEGGAIS ISSVYSKGLL HTLTHALQSS 480 GVDLSQASIS VQIELGKQAN IRSNVPVSVC GAKDGAVPSN NQKMMRSRVA SSGKSDQAVK 540 KLKTCRS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.20832 | 0.0 | cotyledon| flower| hypocotyl| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G017800.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-110 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006579702.1 | 0.0 | transcription factor BIM1 isoform X2 | ||||
Swissprot | Q9LEZ3 | 1e-129 | BIM1_ARATH; Transcription factor BIM1 | ||||
TrEMBL | K7KNF2 | 0.0 | K7KNF2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G07490.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 1e-126 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G017800.2.p |
Entrez Gene | 100800999 |
Publications ? help Back to Top | |||
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