PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G013000.1.p | ||||||||
Common Name | GLYMA_05G013000, LOC100812196, MYB109 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 308aa MW: 33518.3 Da PI: 8.0616 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.4 | 3.3e-08 | 8 | 55 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47 W+ +E++ + +a++++ + +W++Ia+ ++ ++ +++k ++q + Glyma.05G013000.1.p 8 WSYDEEKAFENAIAMHWIEesskeQWEKIASAVP-SKSMEEVKQHYQVL 55 *****************99***************.************86 PP | |||||||
2 | Myb_DNA-binding | 38.9 | 2e-12 | 135 | 179 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + Rt+ q+ s+ qky Glyma.05G013000.1.p 135 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 179 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.275 | 3 | 60 | IPR017884 | SANT domain |
SMART | SM00717 | 1.0E-4 | 4 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-4 | 7 | 55 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.1E-9 | 8 | 62 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.2E-6 | 8 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.32E-7 | 8 | 56 | No hit | No description |
PROSITE profile | PS51294 | 16.873 | 128 | 184 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.9E-17 | 130 | 185 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-10 | 132 | 182 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 4.3E-17 | 132 | 182 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.6E-11 | 133 | 178 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-9 | 135 | 180 | No hit | No description |
Pfam | PF00249 | 7.6E-11 | 135 | 179 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MSSSGTIWSY DEEKAFENAI AMHWIEESSK EQWEKIASAV PSKSMEEVKQ HYQVLVEDVS 60 AIEAGHISFP NYASDETTSS NKDFHGSSKA TSSDKRSNCN YGSGFSGLGL DSTTHSSGKG 120 GLSRSSEQER RKGIPWTEEE HRLFLLGLDK FGKGDWRSIS RNFVISRTPT QVASHAQKYF 180 IRLNSMNRDR RRSSIHDITS VNNGDVASSQ APITGLHSST ISSNTMGVGQ SLKHRVQGHI 240 PPGLGMYGTP VGHPVAAPPG HMASAVGTPV MLPPGPHPHP HPHHHAHPHP PYVLPLAYPM 300 APPTMHQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-14 | 4 | 81 | 7 | 79 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22960 | 0.0 | cotyledon| leaf | ||||
Gma.57759 | 0.0 | cotyledon |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00191 | DAP | Transfer from AT1G49010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G013000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031203 | 0.0 | KT031203.1 Glycine max clone HN_CCL_93 MYB/HD-like transcription factor (Glyma17g13010.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003524515.1 | 0.0 | transcription factor SRM1 | ||||
Refseq | XP_028231209.1 | 0.0 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 1e-84 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A445KHU2 | 0.0 | A0A445KHU2_GLYSO; Transcription factor SRM1 | ||||
TrEMBL | Q0PJJ2 | 0.0 | Q0PJJ2_SOYBN; MYB transcription factor MYB109 | ||||
STRING | GLYMA05G07980.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10694 | 33 | 40 | Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49010.1 | 3e-81 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G013000.1.p |
Entrez Gene | 100812196 | 778049 |
Publications ? help Back to Top | |||
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