PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G005400.1.p
Common NameGLYMA_05G005400, LOC102668949
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 315aa    MW: 36135.2 Da    PI: 10.3217
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G005400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-17175221148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT e d  lv++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
  Glyma.05G005400.1.p 175 KGQWTLEQDNALVELVNQFGLKKWSQIAKLLP-GRIGKQCRERWHNHL 221
                          799*****************************.*************97 PP
2Myb_DNA-binding52.89.2e-17227271147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +++WT eEd +l++a+k+ G++ W+ Ia++++ gR ++ +k++w++ 
  Glyma.05G005400.1.p 227 KDSWTLEEDMILIKAHKKVGNK-WSEIAKRLP-GRPENTIKNHWNTT 271
                          679*******************.*********.************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.519170225IPR017930Myb domain
SuperFamilySSF466898.64E-31172268IPR009057Homeodomain-like
SMARTSM007177.6E-16174223IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-27176229IPR009057Homeodomain-like
CDDcd001672.99E-14178221No hitNo description
PfamPF139214.2E-16178235No hitNo description
PROSITE profilePS5129419.76226276IPR017930Myb domain
SMARTSM007174.5E-16226274IPR001005SANT/Myb domain
CDDcd001672.05E-12229272No hitNo description
Gene3DG3DSA:1.10.10.601.5E-21230274IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEFDSSFQGP QYLSSPFPPT TQTMFPSQSS ILIPPSPQPI MFHPNNTTFH HFQDFITNVP  60
TFVMEGPSSN ITTPLYRGSF LGGFVNIHHH HPNKMDALHG HHHKGKIIWD FSQQLMVHSS  120
EASSSKSSSP LSLSNEYGLV MGDYHWHTNQ RSVQQNMKVV KVNMDTNIAN DNIIKGQWTL  180
EQDNALVELV NQFGLKKWSQ IAKLLPGRIG KQCRERWHNH LKPNIKKDSW TLEEDMILIK  240
AHKKVGNKWS EIAKRLPGRP ENTIKNHWNT TKRRQNCKRH KHTIYEGSLL HGYIKKVSAA  300
EDATKEPKKN KMQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-431732752104MYB PROTO-ONCOGENE PROTEIN
1h88_C5e-4316827551158MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-4316827551158MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-431732752104C-Myb DNA-Binding Domain
1msf_C4e-431732752104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G005400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579767.10.0transcription factor MYB115
TrEMBLK7KNL90.0K7KNL9_SOYBN; Uncharacterized protein
STRINGGLYMA05G08761.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143361018
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-55myb domain protein 98