PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G254800.1.p
Common NameGLYMA_04G254800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 363aa    MW: 40929 Da    PI: 8.914
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G254800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.12.9e-116997533
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLee 33
                         k  rr+++NReAAr+sR+RKka++++Le 
  Glyma.04G254800.1.p 69 KMLRRLAQNREAARKSRLRKKAYVKQLES 97
                         6679***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.006664125IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.53E-669104No hitNo description
PfamPF001703.7E-86998IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.1E-77197No hitNo description
PROSITE patternPS0003607287IPR004827Basic-leucine zipper domain
PfamPF141444.7E-25166239IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MKMDIYEPFQ QVSMWGGNFK VDGGLNSIAS PMLMVGTNVE NKSEYIPREP REPSGSGADQ  60
ETTNKDVNKM LRRLAQNREA ARKSRLRKKA YVKQLESSRL KLMQLELEIG KARKQYIPKY  120
LIQGLYMGTA LDAGYIGSTS ETINPGIVAF EIEYGQWVEE QERRNEELRH AFQTQAPGVQ  180
LNVVVQSVLN HYSNLFRMKA EAVKADVLYL LSGAWKPSVE RIFLWIGGSR PSQLLNIIVP  240
QLEPLTDQQI VSINNLRLSS QQAEDALSQG LEKLQQSLVH DMAVDPLSVG NLGLQMARTM  300
EKFEALEGFV NQADHLRQQT LLHMSRILSI HQAARGLLAL GEYFHRLRTL CSLWSARSCE  360
LA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:8003690, ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G254800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359021e-124AC235902.2 Glycine max clone GM_WBc0165F14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006578992.10.0transcription factor TGA3 isoform X1
RefseqXP_006578993.10.0transcription factor TGA3 isoform X1
RefseqXP_014630484.10.0transcription factor TGA3 isoform X1
RefseqXP_014630485.10.0transcription factor TGA3 isoform X1
SwissprotQ392341e-122TGA3_ARATH; Transcription factor TGA3
SwissprotQ93ZE21e-122TGA7_ARATH; Transcription factor TGA7
TrEMBLA0A0R0KCM80.0A0A0R0KCM8_SOYBN; Uncharacterized protein
STRINGGLYMA04G43411.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Representative plantOGRP26791132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22070.11e-117TGA1A-related gene 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D
    The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7.
    PLoS ONE, 2013. 8(12): p. e82032
    [PMID:24324742]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  5. Fang H, et al.
    The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis.
    Plant J., 2017. 91(6): p. 1038-1050
    [PMID:28670772]
  6. Sarkar S, et al.
    Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta.
    Planta, 2018. 247(1): p. 181-199
    [PMID:28913593]