PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.04G251400.1.p | ||||||||
Common Name | GLYMA_04G251400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 323aa MW: 35942.7 Da PI: 9.0533 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.5 | 3.3e-18 | 125 | 175 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+Wv+eIr p ++++r++lg++ t+e Aa+a++aa ++l+g Glyma.04G251400.1.p 125 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 175 59*****998.**********9...336************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.98E-20 | 125 | 185 | No hit | No description |
SMART | SM00380 | 8.2E-36 | 126 | 189 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-29 | 126 | 184 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-11 | 126 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.694 | 126 | 183 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-20 | 126 | 185 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.7E-8 | 127 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-8 | 149 | 165 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 323 aa Download sequence Send to blast |
MVLSINSGSL FFPTFTFDLI LFPTFRTAAT RYRERERERA KKKQTSTQQK EKEKPLKHAP 60 LIPTSKKVLL FKHFLFTEEG SLHLHLQPSI MVKLEHKIKT EPSSKEMRLS SLSSSASTSS 120 DCKKKKYKGV RMRSWGSWVS EIRAPNQKTR IWLGSYSTPE AAARAYDAAL LCLKGSSANL 180 NFPLSSSQQY IPGEAVMSPK SIQRVAAAAA NSFIDNANTP PSPPPASNPS SLASSPSLVS 240 SPSDQIDDNA SLISSFEAYT SCDQANQPMT MNVMEPWYTF ADGLQSPKYV DQMLSGAFFD 300 FDSSHLFDDL YEESDIRLWS FC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-14 | 123 | 184 | 2 | 64 | ATERF1 |
3gcc_A | 4e-14 | 123 | 184 | 2 | 64 | ATERF1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269|PubMed:21069430}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00156 | DAP | Transfer from AT1G21910 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.04G251400.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FJ228458 | 0.0 | FJ228458.1 Glycine max AP2 domain-containing transcription factor 6 (AP2-6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001239881.1 | 1e-169 | AP2 domain-containing transcription factor 6 | ||||
Swissprot | Q9SFE4 | 2e-45 | ERF12_ARATH; Ethylene-responsive transcription factor ERF012 | ||||
TrEMBL | K7KM79 | 0.0 | K7KM79_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G43040.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4798 | 31 | 56 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G21910.1 | 1e-32 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.04G251400.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|